Locus 328

Sequence ID 2L_DroMel_CAF1
Location 987,272 – 987,382
Length 110
Max. P 0.593639
window520

overview

Window 0

Location 987,272 – 987,382
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.93
Mean single sequence MFE -25.04
Consensus MFE -12.71
Energy contribution -13.21
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.51
SVM decision value 0.12
SVM RNA-class probability 0.593639
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 987272 110 + 22407834
AAUAAAUGCAUGUUUCAUGGCUCUGAAGCACUAAG--CACCGGUUGGCUUU------UAAUUUGUUCAAAAGCCAUGCUAUUGCGAAUGAAUCAUUAAAUCAAUGCUUGAAACAG--CAC
......(((.(((((((.(((..(((........(--((..((((((((((------(.........)))))))).)))..)))((.....))......)))..)))))))))))--)). ( -29.40)
>DroSec_CAF1 108174 111 + 1
AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAGCGCACUGGUUGGCUUU------UAAUUUGUUCAAAAGCCGUGCUAUUGCGAACGAAUCAUUAAAUCAAUGCUC-AAACAG--CAC
...................(((...(((((.....((((.(((((((((((------(.........)))))))).)))).))))...((.........))..)))))-....))--).. ( -25.50)
>DroSim_CAF1 108786 111 + 1
AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAGCGCACUGGUUGGCUUU------UAAUUUGUUCAAAAGCCGUGCUAUUGCGAAUGAAUCAUUGAAUCAAUGCUC-AAACAG--CAC
...................(((...(((((.....((((.(((((((((((------(.........)))))))).)))).))))..(((.((...)).))).)))))-....))--).. ( -27.30)
>DroEre_CAF1 114276 115 + 1
AACAAAUGCAU-UUUCAUGGCUCUGGAGCACUAAG--CACUGGCUCGCUUUUCGCACUAAUUUGUUCAAAAGCCGUGCUAUU-CAGAUGCAUCACUAAAUCAACGCUC-AAGCGGCGCAC
.....((((((-((..(((((.(..((((.(....--....)))))((((((.(.((......)).))))))).).))))).-.))))))))...........(((..-..)))...... ( -28.10)
>DroYak_CAF1 114684 86 + 1
AACAAAUGCAUAUUUCAUGGCUCCAGAGCA------------------------------UUUGUUCAAAAGCCGCGACAUU-CAACUGAAUCAUUAAAUCAAUGCUC-AAACAA--CAC
.......((((...((.(((((...((((.------------------------------...))))...))))).)).(((-(....))))..........))))..-......--... ( -14.90)
>consensus
AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAG__CACUGGUUGGCUUU______UAAUUUGUUCAAAAGCCGUGCUAUUGCGAAUGAAUCAUUAAAUCAAUGCUC_AAACAG__CAC
......((((.....(((((((...(((((...........((....)).............)))))...)))))))....))))................................... (-12.71 = -13.21 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006