| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,490,283 – 9,490,394 |
| Length | 111 |
| Max. P | 0.741569 |
| Location | 9,490,283 – 9,490,394 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.04 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9490283 111 - 22407834 UGCAUUUGAAAUACUUGCCCCCUUCCCCUCACCCUACUCACUCCGCACAAAUCACCCCUUAUGGCCGUGGUAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((.............................((((((.((..((..((.(........).))..))..)).)))))).(((((.....))))))))(((((....))))) ( -23.50) >DroPse_CAF1 47067 84 - 1 UGCAUUUGAAAUACUUUGCCC-A-------------------G--UGC-CAGUGCCCCAC----CCUUGGCAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((...............(((-(-------------------.--(((-(((((...)))----...)))))..)))).(((((.....))))))))(((((....))))) ( -24.70) >DroSec_CAF1 47880 99 - 1 UGCAUUUGAAAUACUUGCUCCCCCCC----------CUCCCUC--CGCAAAUCACCCCUUAUGGCCGUGGUAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((.......................----------.....((--(((..(((((.((....))..)))))..))))).(((((.....))))))))(((((....))))) ( -22.70) >DroSim_CAF1 47684 97 - 1 UGCAUUUGAAAUACUU--UCCCCCCU----------AUCCCCC--CACAAAUCACCCCUUAUGGCCGUGGUAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((.............--........----------.....((--(((..(((((.((....))..)))))..))))).(((((.....))))))))(((((....))))) ( -25.90) >DroYak_CAF1 49859 99 - 1 UGCAUUUGAAAUACUUGCCC--ACCA----------CUCGCUCCGCACAAAUCACCCCUUAUGGCCGUGGUAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((..............(((--((..----------...((...))....(((((.((....))..)))))..))))).(((((.....))))))))(((((....))))) ( -24.40) >DroAna_CAF1 66263 95 - 1 UGCAUUUGAAAUACUUGACCCUCCUC----------CUGGCAG--CGC-CUUCGCCCCUC---GUCCUGGCCUGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((.....................((----------(((.(((--.((-(...((.....---))...)))))))))))(((((.....))))))))(((((....))))) ( -24.00) >consensus UGCAUUUGAAAUACUUGCCCCCCCCC__________CUCCCUC__CACAAAUCACCCCUUAUGGCCGUGGUAAGUGGGAAAUUCUUAUUGAAUUGCAUGUGGCAUGCCACA (((....................................................(((.....((....))....))).(((((.....))))))))(((((....))))) (-16.26 = -16.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:41 2006