| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,489,259 – 9,489,371 |
| Length | 112 |
| Max. P | 0.684781 |
| Location | 9,489,259 – 9,489,371 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.51 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -22.35 |
| Energy contribution | -23.80 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9489259 112 + 22407834 CCCCAAC-------CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU .......-------((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroPse_CAF1 46099 99 + 1 ------CUG-----CUGCUGCUGUAUGUGACUUGCAUGCUGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUU-GUCUUCUC--------UCUCCCCGGUUUUU ------..(-----((((.((.((((((.....)))))).))))..)))(.(((((((((((((...........))))).)))))))-).).....--------.............. ( -19.20) >DroSec_CAF1 47108 114 + 1 CCCCACCCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU .........-----((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroEre_CAF1 47792 114 + 1 GCCCACCCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUCCGCUUUUU .........-----((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroYak_CAF1 48840 108 + 1 GC----CCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCC--GUUACAAAUUUCGGUCUUCUCCGGCGGUUUUUCUUCGCUUUUU ..----...-----((((((..((((((.....))))))(((((...)))))........((((..((((((..--....))))))..)))).....))))))................ ( -30.90) >DroAna_CAF1 65198 109 + 1 GCCUUCCCUCUAUCAGGCCAAUGUAUGUGACUUGCAUGCUGCGACCAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUU-GGU-----CUGGCUGUUUUUCCU----UCCA ............(((((((((....(((((((.(((.((((....))))....((((....)))).....)))..)))))))...))-)))-----))))...........----.... ( -26.40) >consensus GCCCACCCC_____CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU ..............((((((..((((((.....))))))(((((...)))))........((((..((((((........))))))..)))).....))))))................ (-22.35 = -23.80 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:40 2006