Locus 3276

Sequence ID 2L_DroMel_CAF1
Location 9,487,455 – 9,487,557
Length 102
Max. P 0.997262
window5203

overview

Window 3

Location 9,487,455 – 9,487,557
Length 102
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 79.07
Mean single sequence MFE -30.78
Consensus MFE -19.38
Energy contribution -20.06
Covariance contribution 0.68
Combinations/Pair 1.26
Mean z-score -2.98
Structure conservation index 0.63
SVM decision value 2.83
SVM RNA-class probability 0.997262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9487455 102 + 22407834
------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA
------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70)
>DroSec_CAF1 45144 102 + 1
------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCGCAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA
------........(((((((...(((((.....((((....(-((((....)))))....)))).(((..----....----.)))..............)))))...))))))). ( -29.30)
>DroEre_CAF1 45977 102 + 1
------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA
------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70)
>DroYak_CAF1 46774 102 + 1
------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA
------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70)
>DroAna_CAF1 63521 109 + 1
GGCAGCAGCAGACAGGCACAAAAAUAUACACACACCAGCACACACCACACAUGUGUGGGAGUGCACG-AGUGCGUGUGAGUGCAUGCGUGAGUUG----GAGAGCGGGUGUGUG---
.......((......))...........((((((((.((.(((.(((((....)))))..)))((((-.(((((......))))).)))).....----....)).))))))))--- ( -38.50)
>consensus
______CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU_UCACACAUGUGAAGAAAUGGCCACAGU____UAUA____AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA
......................(((((((.....((((......((((....)))).....))))....................((((.((((.......))))))))))))))). (-19.38 = -20.06 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:38 2006