Locus 3275

Sequence ID 2L_DroMel_CAF1
Location 9,487,349 – 9,487,440
Length 91
Max. P 0.742831
window5202

overview

Window 2

Location 9,487,349 – 9,487,440
Length 91
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 77.35
Mean single sequence MFE -25.33
Consensus MFE -16.76
Energy contribution -17.15
Covariance contribution 0.39
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value 0.45
SVM RNA-class probability 0.742831
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9487349 91 - 22407834
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGUCUGGUGGAAGGCAAGG-------GGCUAA------
......(((.(.((((...(((..(.(((((((.((...((((((((.....))))))))..)).-----------))))))))..))).))))).-------)))...------ ( -27.00)
>DroSec_CAF1 45031 98 - 1
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGGCGGGUUGUAGGCAAGGGGGGCGGGGCUAA------
..(((((((.(.((((.(((..(.(((............((((((((.....))))))))((...-----------.))))).)..))).)))).).).))))))....------ ( -27.10)
>DroEre_CAF1 45878 84 - 1
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGGCUGGUGGGCGGCAA--------------A------
...((((((((.((((((.....))))))...........(((((((.....)))))))((((..-----------.....))))..)))))))--------------)------ ( -26.40)
>DroWil_CAF1 68096 95 - 1
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGGCGGUAACGAGGGACGUUUAGUUUGGCCUAGGGGAGGGCAA--------------A------
...((((((.((((((...(((..(((.((((.....))))....)))..)))...)))))......(.(((((......))))).)).)))))--------------)------ ( -21.90)
>DroYak_CAF1 46675 84 - 1
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACGAAA-----------UGGUCGGGUAGGCGUUAA--------------A------
((.((((((....(((((.....)))))(((((.((...((((((((.....))))))))..)).-----------))))).)))))).))...--------------.------ ( -22.10)
>DroAna_CAF1 63380 102 - 1
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------AAAGGCGGC-GGCGG-AAUGAGGGCGGGGUGAAGUGCGA
..(((((((((.((((((.....))))))..........((((((((.....)))))))).....-----------.......))-)))))-))...(.((........)).).. ( -27.50)
>consensus
ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA___________UGGGCUGGUGGGCGGCAA______________A______
....(((((...((((((.....))))))..........((((((((.....)))))))).............................)))))..................... (-16.76 = -17.15 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:37 2006