| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,485,180 – 9,485,278 |
| Length | 98 |
| Max. P | 0.630910 |
| Location | 9,485,180 – 9,485,278 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.63 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -11.79 |
| Energy contribution | -11.87 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9485180 98 + 22407834 AUGGGGGCUGGCAA-----------------GGGGGGGUGCGAUGCGUGCAAGCCCUUUUAAAAUGCAU-UCGCAGCGCAAAUGCCAGGACAACCGUAUAAAAACUGGGUGAAAAG ((((..(((((((.-----------------...(.(.((((((((((...............))))).-))))).).)...))))))..)..))))................... ( -28.86) >DroSec_CAF1 42792 93 + 1 AUGGGCGCUGGCAA-----------------UG--GGGUGCAAUGCGUGCAAGCCCUUU-A-AAUGCAU-UCACAGCGUAAAUGCCAGGGAAACCGUAUAA-AACUGGGUGGAAAG ((((.(.((((((.-----------------.(--((.((((.....))))..)))...-.-.((((..-.....))))...)))))).)...))))....-.............. ( -27.30) >DroSim_CAF1 42730 77 + 1 -------------------------------------GUGCGAUGCGUGCAAGCCCUUU-AAAAUGCAU-UCACAGCAGAAAUGCCAGGGAAACUGUAUAAAAACUGGGUGAAAAG -------------------------------------(..((...))..)..((((...-...((((..-.....(((....)))..((....)))))).......))))...... ( -17.72) >DroEre_CAF1 43580 102 + 1 AUGGGGGCUGGGGG-CU------------GGCGAGGGGUGCGAUGCGUGCCAGCCCGUU-GAAAUGCAUUUCGCAGCGGAAAUGCCAGGGAAACUGUAUAAAAACCGGGUGAAAUG ....(((((((.((-((------------.(((.....))).).)).).)))))))...-......((((((((..(((..((((..((....)))))).....))).)))))))) ( -35.90) >DroYak_CAF1 44328 81 + 1 AUGGGCGCUUGAGG--------------------GGGGUG-------------CCCUUU-AAAAUGCAU-UCGCAGCGGAACUGCGAGGGAAACUGCAUAAAAAGUGGGUGAAAAU ..((((((((....--------------------.)))))-------------)))...-...((((..-((((((.....))))))((....))))))................. ( -27.40) >DroAna_CAF1 61318 114 + 1 AGACGGGCAGGCGGGCAGCCAGGAUGGGGAGCAGGAUGUGCAGGAAAAGGAUGCCCUCU-AAAAUGCAU-UCGCAGCGGAAAUGCCAGGGAAACUGCAUAAAAACUAGGUGAAAAG (((.((((((((.....)))..........(((.....)))..........))))))))-........(-((((.......((((..((....)))))).........)))))... ( -27.69) >consensus AUGGGGGCUGGCGG__________________G_GGGGUGCGAUGCGUGCAAGCCCUUU_AAAAUGCAU_UCGCAGCGGAAAUGCCAGGGAAACUGUAUAAAAACUGGGUGAAAAG ....................................................((((.......((((........(((....)))..((....)))))).......))))...... (-11.79 = -11.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:36 2006