Locus 3273

Sequence ID 2L_DroMel_CAF1
Location 9,484,069 – 9,484,189
Length 120
Max. P 0.631089
window5200

overview

Window 0

Location 9,484,069 – 9,484,189
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -27.53
Consensus MFE -25.70
Energy contribution -26.26
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.32
Structure conservation index 0.93
SVM decision value 0.20
SVM RNA-class probability 0.631089
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9484069 120 - 22407834
CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAUAUGCUCUAAUAUGUUAGAAAAUUGAAGAAAAUGCUGGCUUAGAGCCAAAAUAAAUACAGAUACC
.((((((((.((((........(((.....))).......)))).)))))))).....(((((((...(((((...(((......))).))))))))))))................... ( -26.66)
>DroEre_CAF1 42549 119 - 1
CCUGUACGCCACUCCAAAAGUGCGGGGUAAUCGAAA-AAAGGGUAGCGUGCGGAAUGCGCUCUAAUAUGGUAGAAAAUUGGAGAAAAUGCUGGCUUAGAGCUAAACUAAACAGAGCUGCC
(((((((............)))))))..........-....((((((..((.....))(((((((..(((((...............)))))..))))))).............)))))) ( -30.46)
>DroYak_CAF1 43188 120 - 1
CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAAAUGCUCUAAUAUGCUAGAAAAUUGAAGAAAAUGCAGGCAAAGAGCUAAAGCAAAUACAAAUGCC
.((((((((.((((........(((.....))).......)))).)))))))).....(((((....((((.(...(((......))).).)))).)))))....(((........))). ( -25.46)
>consensus
CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAUAUGCUCUAAUAUGCUAGAAAAUUGAAGAAAAUGCUGGCUUAGAGCUAAAAUAAAUACAGAUGCC
.((((((((.((((........(((.....))).......)))).)))))))).....(((((((...(((((...(((......))).))))))))))))................... (-25.70 = -26.26 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006