Locus 327

Sequence ID 2L_DroMel_CAF1
Location 987,012 – 987,105
Length 93
Max. P 0.556736
window519

overview

Window 9

Location 987,012 – 987,105
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.43
Mean single sequence MFE -21.75
Consensus MFE -15.80
Energy contribution -15.75
Covariance contribution -0.05
Combinations/Pair 1.18
Mean z-score -1.16
Structure conservation index 0.73
SVM decision value 0.05
SVM RNA-class probability 0.556736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 987012 93 - 22407834
CGCAGUCAGUCAGUGCCAAUAAACUGCA-GACUAAUUCGAGCAAUUACGAGUUGGUGGCCUGCCAAGGGACCAGGGACU----------AAACAAAAGUCGCAU
.(((((..((........))..))))).-.(((((((((........)))))))))(((((.....))).)).(.((((----------.......)))).).. ( -24.70)
>DroPse_CAF1 113033 99 - 1
AUCGGA----CACUUUCCAUAAACUGCACGACUAAUUCGUGCAAUUACGAAUUGGUGGCCUGCCAAGGGAAUAG-AACCCCGAAAACUGAAACAAAAGUCGCAU
.((((.----..((((((......(((((((.....)))))))........(((((.....))))).)))).))-....))))....((..((....))..)). ( -23.10)
>DroSec_CAF1 107923 88 - 1
CGCAGU----CAGUGCCAAUAAACUGCA-GACUAAUUCGAGCAAUUACGAAUUGGUGGCCUGCCAAGGGACCAG-GACU----------AAACAAAAGUCGCAU
.(((((----..((....))..))))).-.(((((((((........)))))))))(((((.....))).))..-((((----------.......)))).... ( -24.00)
>DroSim_CAF1 108535 88 - 1
CGCAGU----CAGUGCCAAUAAACUGCA-GACUAAUUCGAGCAAUUACGAAUUGGUGGCCUGCCAAGGGACCAG-GACU----------AAACAAAAGUCGCAU
.(((((----..((....))..))))).-.(((((((((........)))))))))(((((.....))).))..-((((----------.......)))).... ( -24.00)
>DroEre_CAF1 114019 77 - 1
C---------------CAAUAGACUGCC-GGCUAAUUCGAGCCAUUACGAUUUGGUGGCCUGCCAAGGGACCAG-GACU----------AAACAAAUGUCGCAU
.---------------.....(((....-((((......))))......(((((.(((((((((...))..)))-).))----------)..)))))))).... ( -17.20)
>DroYak_CAF1 114426 78 - 1
U--------------UCAAUAGACUGCA-GACUAAUUCGAGCAAUUACGAAUUGGUGGCCUGCCAAGGGACCAG-GACU----------AAACAAAAGGCGCAC
.--------------.........(((.-.(((((((((........))))))))).((((.....((......-..))----------.......))))))). ( -17.50)
>consensus
CGCAGU____CAGUGCCAAUAAACUGCA_GACUAAUUCGAGCAAUUACGAAUUGGUGGCCUGCCAAGGGACCAG_GACU__________AAACAAAAGUCGCAU
........................(((...(((((((((........)))))))))(((((.....))).))............................))). (-15.80 = -15.75 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:05 2006