| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,444,898 – 9,444,993 |
| Length | 95 |
| Max. P | 0.666844 |
| Location | 9,444,898 – 9,444,993 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.57 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -5.48 |
| Energy contribution | -5.48 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9444898 95 - 22407834 UGCAUUAAUGCAAUUCGCUUUUU--UUCUGGUUUGCA----CUCAAGCCCCCCCCCCCCCCCUCGAGACAUUCGUUUUUAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).((((((((((--(((.((((((..----..)))))).......(((.....(((((....))))).....))-))))))))))))))--.. ( -29.10) >DroPse_CAF1 9071 94 - 1 UGCAUUAAUGCAAUCAUUUUUUU--UUCUUCUUUCAGUUUUCUCUU-----UUCUCUCACUUUUUUCAC-UACAU-UU-CCCUGGAUGGAGAUGGGCGAAAAGA ((((....))))...........--.................((((-----(((.(((((((..((((.-.....-..-...))))..))).)))).))))))) ( -17.10) >DroSec_CAF1 9452 93 - 1 UGCAUUAAUGCAAUUCGUUUUUU--UUCUGGUUUGCA-------GAACGUCCGUUUUCCCCCUCGAGACGUCCGUUUUUAUUUGGGGGAAAAGGGGCGAA--AA ((((....))))...........--(((((.....))-------)))(((((.(((((((((..(((((....))))).....))))))))).)))))..--.. ( -34.80) >DroSim_CAF1 9643 94 - 1 UGCAUUAAUGCAAUUCGUUUUUUUGUUCUGGUUUGCA-------GAACGUCCGUUUUCCCCCUCGUGACGUCCGUUUUUAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).(((........((((((.....))-------))))((((.((((((((.....(((....))).......))-)))))).)))))))--.. ( -32.60) >DroEre_CAF1 9682 83 - 1 UGCAUUAAUGCAAUUCG-UU-UU--UUCUGGUUUCCA--------------CUCACUCCGCUUCGUGACGUCCGUUUUCAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).....-..-..--............--------------.((((........))))(((((.(((((......-.))))).)))))..--.. ( -18.10) >DroYak_CAF1 9584 89 - 1 UGCAUUAAUGCAAUUCGGUU-UU--UCCUGGUUUGCA----CUCAA-----CUCACUCCCCUUCGUGACGUCCGUUUUCAUUUGG-GGGAAAGGGCAAAA--GA (((.....(((((..(((..-..--..)))..)))))----.....-----.....((((((..((((.........))))..))-))))....)))...--.. ( -23.30) >consensus UGCAUUAAUGCAAUUCGUUUUUU__UUCUGGUUUGCA_______AA_____CUCUCUCCCCCUCGUGACGUCCGUUUUUAUUUGG_GGAAAAGGGGCGAA__AA ((((....))))...........................................................((.(((((........))))).))......... ( -5.48 = -5.48 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:19 2006