Locus 3264

Sequence ID 2L_DroMel_CAF1
Location 9,428,296 – 9,428,390
Length 94
Max. P 0.995764
window5182

overview

Window 2

Location 9,428,296 – 9,428,390
Length 94
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 69.87
Mean single sequence MFE -23.19
Consensus MFE -9.87
Energy contribution -11.42
Covariance contribution 1.56
Combinations/Pair 1.22
Mean z-score -2.66
Structure conservation index 0.43
SVM decision value 2.61
SVM RNA-class probability 0.995764
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9428296 94 - 22407834
----------AAUACA------CUAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUAAUCAUCUCUCUUAAAAUUAGAGCCUUAU---GAGAGGGCU
----------......------...........((((((((((.......((((.((((........)))).))))....((((.......)))).....)---))))))))) ( -21.90)
>DroSec_CAF1 56999 97 - 1
----------AAUACA------GCAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUGAUCAUCUCUCUUAGAAUGACAGCCUUAUAGAGAGAGGGCU
----------......------((.......))(((((............((((.((((........)))).)))).(((((((.((.........))...)))))))))))) ( -22.80)
>DroSim_CAF1 59449 97 - 1
----------AUUACA------GCAUUUAUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUGAUCAUCUCUCUUAGAAUGACAGCCUUAUAGAGAAAGGGCU
----------......------((.......))(((((((((........((((.((((........)))).)))).(((.....)))................))))))))) ( -20.50)
>DroEre_CAF1 57277 99 - 1
GGAGA-----CUAUUA------GCUUUUCUUGCAGCCCUUUCGAAUUUUCGAUUGGGUUGUCUUCCCAACCUAAUCAUCUCCCUCAAAAUGACAGCCUUGUA---AAAAGGCU
(((((-----..((((------(........(((((((..((((....))))..))))))).........)))))..)))))...........((((((...---..)))))) ( -33.43)
>DroYak_CAF1 60522 110 - 1
AUACAUCUCAUUAAUAGGCUGCGCAUUUCUUGCAGCCUUUUCGAACUUUCGAUUCGGUUGUCUUCCCAACCUAAUCAUCUCUCUUAAAAUGACCGCCUUAUA---GAAGGGCU
.......(((((...((((((((.......))))))))............((((.(((((......))))).))))...........)))))..(((((...---..))))). ( -29.60)
>DroAna_CAF1 58479 81 - 1
------------------------UUCUUUAGCAGCCCGUUCGAACUCUUUUGUAGGUUGUCUCCCCAGUCGUUCCAUUUCCCUGAGUAUUACUGCCUUGAA--------GUU
------------------------..(((((((((((....((((....))))..)))))).....((((.((.(((......)).).)).))))...))))--------).. ( -10.90)
>consensus
__________AUUACA______GCAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUGUCUUCCCAACCUAAUCAUCUCUCUUAAAAUGACAGCCUUAUA___AAAGGGCU
.................................(((((((((((....))))...(((((((............................))))))).........))))))) ( -9.87 = -11.42 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:18 2006