| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,427,308 – 9,427,422 |
| Length | 114 |
| Max. P | 0.906512 |
| Location | 9,427,308 – 9,427,422 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -39.45 |
| Consensus MFE | -26.15 |
| Energy contribution | -26.90 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9427308 114 + 22407834 UUUC------CCACAGACUGGCAUGAUCCAGUCGACGAUGAUGGCCAUGCCCUACAUGGACAAGACACAGAUGGGCAUGGGUGGCAUGGUGGUUAACAUGUCCUCUGUCUAUGGCCUGGA ....------(((..((((((......)))))).........(((((((.((.....)).......(((((.(((((((..((((......)))).)))))))))))).)))))))))). ( -41.80) >DroVir_CAF1 71589 109 + 1 -----------UCCAGAUGGGCAUGAUACACAUGACUUUGAAGGCCAUGCCCUAUAUGGACAAGACCCAAAUGGGCCUGGGCGGCAUGGUGGUGAACAUGUCCUCCGUCUAUGGCCUGGA -----------(((((..(((((((.....((......)).....)))))))..(((((((.((.(((....))).))(((.((((((........)))))).))))))))))..))))) ( -42.30) >DroGri_CAF1 69681 113 + 1 -CUC------ACACAGACUAGCAUGAUGCACAUGACUAUGAAGGCGAUGGUCUACAUGGACAAAACCCAAAUGGGCCAUGGUGGCUUGGUGGUGAACAUGUCUUCCGUCUAUGGACUGGA -...------...(((.(((....((((.((((((((((.(((((.((((((((..(((.......)))..)))))))).))..))).)))))...)))))....))))..))).))).. ( -33.80) >DroWil_CAF1 90694 119 + 1 -CUUUUUCGUUUACAGACUGGCAUGAUGCAAAUGACAAUGAUGGCGAUGCCUUAUAUGGACAAAACCCAAAUGGGCAUGGGUGGCAUGGUGAUCAAUAUGUCCUCUGUCUAUGGACUGGA -((..(((((..(((((..((((((.(((....).)).((((.((.(((((...((((.......(((....)))))))...))))).)).)))).)))))).)))))..)))))..)). ( -35.61) >DroMoj_CAF1 80937 109 + 1 -----------UGCAGAUGGGCAUGAUUCACAUGACCAUGAAGGCCAUGCCCUAUAUGGACAAGACGCAGAUGGGCAAGGGCGGCAUGGUUAUCAACAUGUCCUCGGUCUAUGGCCUGGA -----------....((.(((((((......(((((((((..(.((.(((((....(((......).))...))))).)).)..)))))))))...)))))))))(((.....))).... ( -40.80) >DroPer_CAF1 64293 113 + 1 -CUU------CUGUAGACCGGCAUGAUUAUGAUGACUAUGAUGGCUAUGCCGUAUAUGGACAAGACCCAGAUGGGCAUGGGCGGCAUGGUGAUCAAUCUCUCCUCUGUCUAUGGACUGGA -..(------((((((((.((...(((..((((.((((((.((.(((((((.(((.(((.......))).)))))))))).)).)))))).)))))))...))...)))))))))..... ( -42.40) >consensus _CU________UACAGACUGGCAUGAUGCACAUGACUAUGAAGGCCAUGCCCUAUAUGGACAAGACCCAAAUGGGCAUGGGCGGCAUGGUGAUCAACAUGUCCUCUGUCUAUGGACUGGA ..............((((.((((((.....(((.((((((..(.((((((((....(((.......)))...)))))))).)..)))))).)))..)))).))...)))).......... (-26.15 = -26.90 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:17 2006