Locus 326

Sequence ID 2L_DroMel_CAF1
Location 985,893 – 985,985
Length 92
Max. P 0.521112
window518

overview

Window 8

Location 985,893 – 985,985
Length 92
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -28.25
Consensus MFE -18.34
Energy contribution -17.95
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -1.40
Structure conservation index 0.65
SVM decision value -0.02
SVM RNA-class probability 0.521112
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 985893 92 - 22407834
GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG
...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40)
>DroSec_CAF1 106799 92 - 1
GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG
...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40)
>DroSim_CAF1 107406 92 - 1
GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG
...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40)
>DroEre_CAF1 112952 82 - 1
GUAUGCAAAUUAGUGCAGCUCCUGCCUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUUAUGUGAAUUUCAAAUGGGCGCUUCUUCU--------------
...((((......))))((...(((((((....)))))))...-----------------.......((((((.((.....)).)))))))).......-------------- ( -22.50)
>DroYak_CAF1 113187 90 - 1
GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGCUGGCUCAUGUGAAUUUCAAAUGGGCGCCUCUUCUGUUUCUU------C
....(((.....((((((...))))))(.(((....(((....-----------------...))).((((((.((.....)).))))))))).)...))).....------. ( -21.20)
>DroAna_CAF1 101109 103 - 1
GUAUGCAAAUUAGUGCAACUCCUGCAUGUGGCUACAGGCAUUACACCACCACCCCCAUCACCCGGU-GCUCAUGUGAAUUUCAAAUGGGCACCA----UGUUCCCCCG-----
((((((......(((((.....))))).((....)).))).)))...................(((-((((((.((.....)).))))))))).----..........----- ( -25.60)
>consensus
GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA_________________CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA____UGUUGCACAG____G
((.((((......))))))...(((.(((....))).))).......................(((.((((((.((.....)).))))))))).................... (-18.34 = -17.95 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006