| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,408,405 – 9,408,496 |
| Length | 91 |
| Max. P | 0.563949 |
| Location | 9,408,405 – 9,408,496 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -10.96 |
| Energy contribution | -11.13 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9408405 91 - 22407834 UUCGCUGCAGCGAAAGGGAAAC--GUUUUGUUUGACCCGAAACUUUUU-----CUAUUUAGUUUCGCCGUAGUUUUG---UUUU-------CAGAGAAACUUUUCCCU (((((....)))))(((((((.--(((((.(((((..(((((((....-----......))))))).((......))---...)-------))))))))).))))))) ( -25.10) >DroPse_CAF1 41654 101 - 1 -CAGCAGCAGCAAAAGGGAAACCCCUUUGGUUUGACCCCAAAAGUUUU--CUCCUAUUUAGUUUUCCCAUAGUUUUG---UUUGUUUUGCUGUUCAAAAGUUUUC-CC -..(.(((((((((((((((((......((...(((.......)))..--..))......)))))))((......))---....)))))))))))..........-.. ( -19.60) >DroSec_CAF1 37003 90 - 1 UUCGCUGCAGCGAAAGGGAAAC--GUUUUGUUUGACCCGAAACUUUUU-----CUAUUUAGUUUCGCCGUAGUUUUG---UUUU-------CCGAGACACUUUUC-CU (((((....))))).((((((.--((...........(((((((....-----......))))))).....((((((---....-------.)))))))).))))-)) ( -21.30) >DroEre_CAF1 37366 90 - 1 UUCGCUGCAGCGAAAGGGAAAC--GUUUUGUUUGACCCGAAACUUUUU-----CUAUUUAGUUUCGCUGUAGUUUUG---UUUU-------CAGCCAAACUUUUC-CU ...((((((((((((((((((.--((((((.......)))))).))))-----))......))))))))))))....---....-------..............-.. ( -24.20) >DroYak_CAF1 39191 90 - 1 UUGGCUGCAGCGAAAGGGAAAC--GUUUUGUUUGACCCGAAACUUUUU-----CUAUUUAGUUUCGCCAUAGUUUUG---UUUU-------CAGCAAAACUUUUC-CU .((((...(((((((.(....)--.)))))))......((((((....-----......)))))))))).(((((((---(...-------..))))))))....-.. ( -25.50) >DroAna_CAF1 39715 98 - 1 UUGGUUGCACCGAAAGGGAAAU--GUUUUGUUUGACCCGAAACUUGUUCUGUUCUGUUUAGUUUCGUGGUAGUUUCGUAGUGUU-------CACUAAAAGUUUCU-CG ((((.....))))..(((((((--..........((((((((((....(......)...))))))).))).......((((...-------.))))...))))))-). ( -22.40) >consensus UUCGCUGCAGCGAAAGGGAAAC__GUUUUGUUUGACCCGAAACUUUUU_____CUAUUUAGUUUCGCCGUAGUUUUG___UUUU_______CAGCAAAACUUUUC_CU ...(((((.((((((.(....)..((((((.......))))))..................)))))).)))))................................... (-10.96 = -11.13 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:12 2006