| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,406,332 – 9,406,429 |
| Length | 97 |
| Max. P | 0.869635 |
| Location | 9,406,332 – 9,406,429 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -10.80 |
| Energy contribution | -11.51 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9406332 97 - 22407834 AAGUAUUUGCAUGUAUAUAAAAUGCAUUUUACAUAU------AAAUAAGUUUGAGCGUG--U---GUGUAUCUUCGGGGCACACAACGCAUAGCUGCACAA--------AUAUUAA .((((((((.((((((.....)))))).........------.....((((...(((((--(---((((.((....)))))))).))))..))))...)))--------))))).. ( -25.90) >DroSec_CAF1 34878 86 - 1 AAGUAUUUGCAUGUACAUAAAAUGCAUUUUACAUAU------AAAUAAGUUUGAGCGUG--U-----GUGUCUUUGGGGC---------AUAGCUGCACAA--------AUAUUAA ..(((..(((((.........)))))...)))....------......(((((.(((..--(-----(((((.....)))---------)))..))).)))--------))..... ( -19.30) >DroSim_CAF1 37407 97 - 1 AAGUAUUUGCAUGUACAUAAAAUGCAUUUUACAUAU------AAAUAAGUUUGAGCGUG--U---GUGUGUCUUUGGGGCACACAACGCAUAGCUGCACAA--------AUAUUAA ..(((..(((((.........)))))...)))....------.....((((...((((.--(---(((((((.....))))))))))))..))))......--------....... ( -26.20) >DroEre_CAF1 35361 96 - 1 AAGUAUUCGCAUGUACAUAAAGUGC-UUUUAAAUAU------ACAUAAAUUUGAGCGUG--U---GCGUGUCUUCGGGGCACACAACGCUUUGCUGCACAA--------AUAUUAA ..((((......)))).....((((-..((((((..------......))))))((((.--(---(.(((((.....))))).))))))......))))..--------....... ( -22.50) >DroYak_CAF1 37081 105 - 1 AAGUAUUUGCAUGUACAUAAAAUGCAUUUUACAUAUACACGUACAUAACUCUGAGCGUGAGU---GUGUGUCUUCGGGGCACACAGCGCAUUGCUGCACAA--------AUAUUAA .((((((((..((((.....(((((............(((((.((......)).)))))..(---(((((((.....))))))))..)))))..)))))))--------))))).. ( -30.10) >DroAna_CAF1 37478 103 - 1 AAGUAUCUGCA-AUGCAUAAA--GAAUUUUAUUUAU------AAGUAG--UCGGGUAUG--UGCAGUGUGUCUUGGGGGCAUACAGCGCAUUACUGCAUUAAUGCAAGGAUAUUAA .((((((((((-(((((((((--........)))))------......--...((((((--(((.(((((((.....))))))).))))).))))))))...)))..))))))).. ( -30.00) >consensus AAGUAUUUGCAUGUACAUAAAAUGCAUUUUACAUAU______AAAUAAGUUUGAGCGUG__U___GUGUGUCUUCGGGGCACACAACGCAUAGCUGCACAA________AUAUUAA ..(((..(((((.........)))))...))).....................(((.........(((((((.....)))))))........)))..................... (-10.80 = -11.51 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:11 2006