| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 974,537 – 974,637 |
| Length | 100 |
| Max. P | 0.650562 |
| Location | 974,537 – 974,637 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.13 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.68 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 974537 100 + 22407834 GAAGUUUUGUCGGAAGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACU--------AGGUAAACCGUUCGCCAGAGAGCGAAAGGAAGG ...(((((.((....)).((((..(...((((((((......)))))))).................--------.((....)))..))))..))))).......... ( -24.50) >DroSec_CAF1 103113 99 + 1 GAAGUUUUGGCGGAAGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACU--------AGGUAAACCCUUCCCCAGAGAGCGAAAGGGAA- ....((((((.(((((((((((.((....)).))))......(((.((((((.....)))))).)))--------.......)))))))))))))..(....)....- ( -32.20) >DroSim_CAF1 103709 99 + 1 GAAGUUUUGGCGGAAGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACU--------AGGUAAACCGUUCCCCAGAGAGCGAAAGGGAA- ....((((((.((((.((((((.((....)).))))......(((.((((((.....)))))).)))--------.......)).))))))))))..(....)....- ( -27.80) >DroEre_CAF1 107377 99 + 1 -CAG-UUUGGCGGAGGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACUGUGUAUGUAGGUGAACCGUUCCCCAGAGAG--AA----AG- -...-.........(((((((((..(((.(((..(.......(((.((((((.....)))))).)))..)..))).)))...)))))))))......--..----..- ( -29.60) >DroYak_CAF1 106672 106 + 1 GCAG-UUUGGCGGAAGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACUGUGUAUGUAGGUAAACCGUUCCGCAGGGAGAGAAAGAGAA- ....-....((((((.((((((.((....)).))))...((.(((.((((((.....)))))).))).))............)).))))))................- ( -26.90) >consensus GAAGUUUUGGCGGAAGGGGGCGGGUGCUGACACGCUAAUCAAAGUGUGUUUAUUAAUUAAACGAACU________AGGUAAACCGUUCCCCAGAGAGCGAAAGGGAA_ .....(((((.((((.(((((....)))((((((((......))))))))................................)).))))))))).............. (-21.40 = -21.68 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:03 2006