Locus 3248

Sequence ID 2L_DroMel_CAF1
Location 9,351,742 – 9,351,838
Length 96
Max. P 0.500000
window5157

overview

Window 7

Location 9,351,742 – 9,351,838
Length 96
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.47
Mean single sequence MFE -24.60
Consensus MFE -12.97
Energy contribution -14.58
Covariance contribution 1.62
Combinations/Pair 1.21
Mean z-score -1.86
Structure conservation index 0.53
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9351742 96 - 22407834
UUUCUGCCGUUUCCCGCUUUAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU
.....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40)
>DroSec_CAF1 20636 96 - 1
UUUUUGCCGUUUCCCGCUUCAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU
.....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40)
>DroSim_CAF1 20766 96 - 1
UUUCUGCCGUUUCCCGCUUCAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU
.....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40)
>DroEre_CAF1 21055 107 - 1
UUUCUACUGUUGCCCGUUUGAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAGUUU-UCAACAAUUUUCGGUAAGCCCGUUACUGAUGCAUACUGAUGCAAAU
........((.((..((((..(((((((((....((((....))))(((((((......))-))))).)))))))))))))..)).))...(((((....)))))... ( -25.50)
>DroYak_CAF1 21283 96 - 1
UUUCUGCUGUUUUCCGCUUCAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCAGCG------C-----AAUGCAAAU
.....((((......((((..(((((((((....((((....))))(((((((......))-))))).))))))))))))).)))).------.-----......... ( -25.70)
>DroAna_CAF1 21909 80 - 1
UUC--------------UCACGCCCAAAUUAUGAUUUGUCUGCAAAGUUUGAAUGGAUUUUGCCAACAAUUCCCUG---GCUCGGCC------C-----CAUGCGAAU
...--------------...(((.........((.((((..(((((((((....)))))))))..)))).))...(---((...)))------.-----...)))... ( -17.20)
>consensus
UUUCUGCCGUUUCCCGCUUCAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU_UCAACAAUUUUCGGUAAGCCCGGCG______C_____UAUGCAAAU
.....((((......((((..(((((((((....((((....))))(((((((......)).))))).))))))))))))).))))...................... (-12.97 = -14.58 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:55 2006