| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,351,270 – 9,351,377 |
| Length | 107 |
| Max. P | 0.520634 |
| Location | 9,351,270 – 9,351,377 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.64 |
| Mean single sequence MFE | -32.18 |
| Consensus MFE | -24.02 |
| Energy contribution | -24.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9351270 107 + 22407834 ACGGCUACUGCUAACAUGUGAUGCAGGCGACAAGUGAAGUUUGUCCGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC .((((..((((...........)))).......(((..((((((..((((((((............))))))))..)))))).)))......)))).......--.... ( -32.90) >DroSec_CAF1 20167 106 + 1 ACGGCUACUGCUAACAUGUGAUGCA-GCGACAAGUGAAGUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC .((((..((((...........)))-)......(((..(((((..(((((((((............)))))))))..))))).)))......)))).......--.... ( -34.70) >DroSim_CAF1 20299 104 + 1 --GGCUACUGCUAACAUGUGAUGCA-GCGACAAGUGAAGUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC --(((..((((...........)))-)......(((..(((((..(((((((((............)))))))))..))))).)))......)))........--.... ( -32.40) >DroEre_CAF1 20622 105 + 1 --GGCAACUGCCAACAUGUGAUGCAGGCGACAAGUGAACUUUGCCUGUUGUCGGAAAAUCUAAUAACCGACAGCGAGCAAACACACAAUAACGCCGAGUUUUC--CGGC --(((....)))....((((.(((((((((..((....))))))))((((((((............))))))))..)))..)))).......((((.......--)))) ( -35.60) >DroYak_CAF1 20804 105 + 1 --GGCUACUGCGAACAUGUGAUGCAGGCGACAAGUGAACUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCGAGCAAACACACAAUAACGCCGAGUUUUC--CCGC --((..((((((....((((.((...((((((((....).)))))(((((((((............))))))))).))...))))))....)))..)))....--)).. ( -29.40) >DroAna_CAF1 21476 98 + 1 -------UUGCUAACAUCUGAUGUUAGCGACAAGUGAACUUUGUCUGUUGUCGGGAAAUCUAAUAACGGACAACGAACAAACACACAAUAACU----GUUUGCAGCAGC -------((((((((((...))))))))))...(((...(((((.(((((((.(............).))))))).)))))..))).....((----((.....)))). ( -28.10) >consensus __GGCUACUGCUAACAUGUGAUGCAGGCGACAAGUGAACUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC__CAGC ..(((..((((...........)))).......(((...(((((.(((((((((............))))))))).)))))..)))......))).............. (-24.02 = -24.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:54 2006