Locus 3244

Sequence ID 2L_DroMel_CAF1
Location 9,335,466 – 9,335,557
Length 91
Max. P 0.500000
window5153

overview

Window 3

Location 9,335,466 – 9,335,557
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.85
Mean single sequence MFE -26.22
Consensus MFE -17.75
Energy contribution -19.20
Covariance contribution 1.45
Combinations/Pair 1.20
Mean z-score -1.57
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9335466 91 - 22407834
GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUCAAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA
.....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90)
>DroSec_CAF1 4276 91 - 1
GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA
.....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90)
>DroSim_CAF1 4327 91 - 1
GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA
.....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90)
>DroEre_CAF1 5130 90 - 1
GCAAACUGAAUUCAGAGCCCAUGUGCGAGGAACAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUAUCGCGGGG-AUCGAUUAGACAAA
.....((((..((.((.(((....((((......(((((--------((..((((....))))...)))))))...)))).)))-.))))))))..... ( -19.50)
>DroYak_CAF1 4383 91 - 1
GCAAACUGAAUUCAGAGCCCAUGUGCGCGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUUAGACAAA
.....((((..((.((((((.....((((..(..(((((--------((..((((....))))...))))))).)..)))).))))))))))))..... ( -27.10)
>DroPer_CAF1 5083 95 - 1
GCAAACUC--UGGGGUAACCAUGUUUGAGUCGCUUAAAAUACGACUUUUCAUUGUCAAUGCAAAUUUAGUUGCACUUCCAAGGGGGU--GUGGGACUUG
.(((((..--(((.....))).)))))((((...........(((........))).............(..((((((....)))))--)..))))).. ( -24.00)
>consensus
GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA________UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA
.....((((.....((((((...(((((..(((((..((........))..)))))((((((((....))))))))))))).))))))..))))..... (-17.75 = -19.20 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:51 2006