Locus 3241

Sequence ID 2L_DroMel_CAF1
Location 9,325,173 – 9,325,263
Length 90
Max. P 0.588720
window5150

overview

Window 0

Location 9,325,173 – 9,325,263
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 85.12
Mean single sequence MFE -18.08
Consensus MFE -13.82
Energy contribution -13.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 0.11
SVM RNA-class probability 0.588720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9325173 90 + 22407834
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAGAAGCGCCUCUACCCCGCCCUACCC-CAAA-AAUUUCC
...((((((...((((((.........))))))..)))))).((....)---).......(((.........))).......-....-....... ( -15.80)
>DroSec_CAF1 154357 93 + 1
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAGCAGCAACAGAAGCGCCUCUACCUCGCCCUACCC-CAAA-AAUUCCA
...((((((...((((((.........))))))..)))))).......((.((.......))))..................-....-....... ( -16.00)
>DroSim_CAF1 158391 93 + 1
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAGCAGCAACAGAAGCGCCUCUGCCUCGCCCUACCC-CAAA-AAUUCCC
...((((((...((((((.........))))))..)))))).((....)).((..((((......))))....)).......-....-....... ( -17.80)
>DroEre_CAF1 166799 89 + 1
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAG-AGCGCCUCCAACUCCCCCAGCCC-CGAA-AAUUCCC
...((((((...((((((.........))))))..)))))).......(---(.....-.))....................-....-....... ( -15.40)
>DroYak_CAF1 163861 91 + 1
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAGAAGCGCCUCCAAAUCUCCCAGCCCCCCAA-AAUUCCC
...((((((...((((((.........))))))..)))))).......(---(.......)).........................-....... ( -14.90)
>DroAna_CAF1 155896 91 + 1
AACGCUGCAUUUCAAUUGAAAUAACAAUAAUUGUUUGCAGCAGCCAGUG---GGGCAGCAAUCCCUCGA-CUCGCCCCAUCCCCUAUCCCUUGGC
...((((((...((((((.........))))))..)))))).(((((((---(((((((........).-)).)))))))...........)))) ( -28.60)
>consensus
AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG___CAACAGAAGCGCCUCUACCUCGCCCUACCC_CAAA_AAUUCCC
...((((((...((((((.........))))))..))))))...................................................... (-13.82 = -13.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:48 2006