| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 967,047 – 967,139 |
| Length | 92 |
| Max. P | 0.774283 |
| Location | 967,047 – 967,139 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.83 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.33 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 967047 92 - 22407834 ---CUCUGGUAGUGGCAGUAGCAUCUGCUACUAAUGGAUAGUAGCA--------GAAAACAAAUGGACAACGCACAGAUUCGCACAC--AGCCA-UAUACACACCC-- ---....(((.(((((....)).((((((((((.....))))))))--------))......((((.....((........))....--..)))-)...)))))).-- ( -25.30) >DroVir_CAF1 136709 86 - 1 UGCCUCUGGUAGUGGCAGUAGCAUCUGUUACUAAUGGAUAGUUGUA--------GGAAACAAAUGGACAGCGCACAGAUUCGCACAC--AAACA-AA----------- (((.((((.(((((((((......))))))))).......(((((.--------(....)......)))))...))))...)))...--.....-..----------- ( -21.10) >DroEre_CAF1 100307 90 - 1 ---CUCUGCUAGUGGCAGUGGCAUCUGCUACUAAUGGAUAGUAGCA--------G-AAACAAAUGGACAACGCACAGAUUCGCACAC--GA-AA-GAUACACACCC-- ---(.((((.....)))).)...((((((((((.....))))))))--------)-).......((.....((........))...(--..-..-).......)).-- ( -23.30) >DroYak_CAF1 98964 102 - 1 ---CUCUGGCAGUGGCAGUAGCAUCUGCUACUAAUGGAUAGUAGCAUAGUAGCAGAAAACAAAUGGACAACGCACAGAUUCGCAUAC--AACCA-GAUACACAUCCUU ---.(((((..((((((((.((.((((((((((.((........))))))))))))........(.....)))....))).)).)))--..)))-))........... ( -25.40) >DroMoj_CAF1 144151 87 - 1 UGCUUCUGGUCGUAGCAGUAGCAUCUGUUACUAAUGGAUAGUAGUA--------GAAAACAAAUGGACAGCGCACAGAUUCGCACAC--AAACCAGA----------- (((.((((..(((.((....)).((((((((((.....))))))))--------)).............)))..))))...)))...--........----------- ( -18.10) >DroAna_CAF1 92980 90 - 1 ---CUCUGGGGGUGGCAGCAACAUCUGCUACUAAUGGAUAGUAGCA--------GA-AACAAAUGGACAACGCACAGAUUCGCCUACACAAGGA-UCUACACA----- ---........(((...((....((((((((((.....))))))))--------))-.......(.....)))..((((((..........)))-))).))).----- ( -23.30) >consensus ___CUCUGGUAGUGGCAGUAGCAUCUGCUACUAAUGGAUAGUAGCA________GAAAACAAAUGGACAACGCACAGAUUCGCACAC__AAACA_GAUACACA_____ ....((((.(((((((((......))))))))).)))).................................((........))......................... (-14.30 = -14.33 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:02 2006