Locus 3236

Sequence ID	2L_DroMel_CAF1
Location	9,297,897 – 9,297,990
Length	93
Max. P	0.993210

overview

Window 1

Location	9,297,897 – 9,297,990
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	97.85
Mean single sequence MFE	-29.82
Consensus MFE	-27.76
Energy contribution	-28.16
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.96
Structure conservation index	0.93
SVM decision value	2.38
SVM RNA-class probability	0.993210
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9297897 93 + 22407834
CUCAGGUGAGCGAACAGAAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
(((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. ( -30.10)
>DroSec_CAF1 127303 93 + 1
CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
((((((((.((........)))))...((((((......))))))((((((((......))))))))........(((....))).))))).. ( -30.00)
>DroSim_CAF1 130317 93 + 1
CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
((((((((.((........)))))...((((((......))))))((((((((......))))))))........(((....))).))))).. ( -30.00)
>DroEre_CAF1 137734 93 + 1
CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCCCUGGGAUUUAUCACAGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
....((((.((........))))))..((((((......))))))...((..(.((((.((.(((((.......))))))))))).)..)).. ( -28.90)
>DroYak_CAF1 135599 93 + 1
CUCAGAUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
(((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. ( -30.10)
>consensus
CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA
(((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. (-27.76 = -28.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006