Locus 3231

Sequence ID 2L_DroMel_CAF1
Location 9,254,566 – 9,254,686
Length 120
Max. P 0.623177
window5131

overview

Window 1

Location 9,254,566 – 9,254,686
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.22
Mean single sequence MFE -32.41
Consensus MFE -20.08
Energy contribution -20.45
Covariance contribution 0.37
Combinations/Pair 1.22
Mean z-score -2.37
Structure conservation index 0.62
SVM decision value 0.18
SVM RNA-class probability 0.623177
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9254566 120 - 22407834
AAAUGCAACAGAAAAUAGUGAGGAUCGAAAGAUCGAUAGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGAACGAGCUGCAGACCAUAAUGGGCAACCAGAGUGUGG
...((((........(((((.(((((....))))...................(((((((...)))...))))...).))))).......))))..(((((.(((....)))...))))) ( -32.46)
>DroSec_CAF1 84534 120 - 1
AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGCAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG
........((...((((((...((((((....)))))).....))))))..))(((((((...)))...)))).(((((.(((((.....))))).......(((....)))..))))). ( -34.30)
>DroSim_CAF1 86430 120 - 1
AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGACGGCCAUGCAAAGCAAGUUGGCAUACGCACUGCAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG
...(((((.......)))))..((((....))))(((((.....)))))....(((((((...)))...)))).(((((.(((((.....))))).......(((....)))..))))). ( -33.60)
>DroEre_CAF1 91434 120 - 1
AAAUUCAACAGAAACUCGAGAUAUUCGAGAGGACGAUUGAAGGACGAUUGAUGGUCCUGCAAAACAAGUUGAGAUACGAGCUGAAUGAGCUCCAGACCAUAAUAGGAAACAAGAGCAAGG
...((((((.....((((((...))))))(((((.((..(.......)..)).))))).........))))))....(((((.....)))))............(....).......... ( -29.30)
>consensus
AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGAAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG
......................((((....))))(((((.....))))).....((((((....................(((((.....))))).......(((....)))..)))))) (-20.08 = -20.45 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006