Locus 323

Sequence ID 2L_DroMel_CAF1
Location 958,313 – 958,407
Length 94
Max. P 0.809332
window515

overview

Window 5

Location 958,313 – 958,407
Length 94
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 72.94
Mean single sequence MFE -16.95
Consensus MFE -9.92
Energy contribution -9.90
Covariance contribution -0.02
Combinations/Pair 1.40
Mean z-score -1.55
Structure conservation index 0.59
SVM decision value 0.64
SVM RNA-class probability 0.809332
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 958313 94 + 22407834
CCCAC-----CAAUCCGCCACCACUCCC--CCACCAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGACGAAGACGGAG
.....-----.............((((.--.......((.((....)).))............(((....((((((((...-.))))))))....))))))) ( -16.80)
>DroGri_CAF1 108200 85 + 1
CUCC-----UUAAGU----------UCCC-CC-CGGCCGCAACCAAGUACAAACACAAUCAGUGUCAAAAUUUUCGACCGAAAGUCGAAAGCAAUGGCGAAG
....-----......----------....-..-..((((.............((((.....)))).....(((((((.(....))))))))...)))).... ( -15.70)
>DroSec_CAF1 86922 93 + 1
CCCAC-----CAAUCCGCCACCACUCC---CCUCAAAUGAGCCCCAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGGCGAAGACGGAG
.....-----.............((((---.(((....)))......................(((....((((((((...-.))))))))....))))))) ( -16.30)
>DroSim_CAF1 88207 90 + 1
CCCAC-----CAAUCCGCCACCACUCCCCCCCUCAAAUGAGCCCCAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGA------AGACGGAG
.....-----...((((..............(((....))).............................((((((((...-.)))))------))))))). ( -14.30)
>DroEre_CAF1 92012 75 + 1
CUCCC-----------------CCUGC---CCACAAAUGAGCCCGAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGA------CGGAG
((((.-----------------.(((.---.......((.((....)).))...(((.....))))))..((((((((...-.))))))))------.)))) ( -13.70)
>DroYak_CAF1 90008 98 + 1
CCCCCAUCUCCACUCUGGUGCUCCUCG---CCUCAAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGACCCAGACGGAG
.......((((......(((((....(---(.((....))))...))))).............(((.(..((((((((...-.))))))))..).))))))) ( -24.90)
>consensus
CCCAC_____CAAUCCGCCACCACUCC___CCUCAAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA_AGUCGAAGAC_AAGACGGAG
.((.....................................((....))...............(((....((((((((.....))))))))....))))).. ( -9.92 =  -9.90 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:01 2006