| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,252,038 – 9,252,139 |
| Length | 101 |
| Max. P | 0.903673 |
| Location | 9,252,038 – 9,252,139 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 76.00 |
| Mean single sequence MFE | -43.97 |
| Consensus MFE | -27.99 |
| Energy contribution | -29.47 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9252038 101 + 22407834 AGCGCAUUUGCUUCUGUUUCAAAGGAGUGCGGUCGGCACUGAAGGCCUUCGCACGCGAGGCCAUCGGUGUGCGCAGUUUGCUGCGCGAAUUGCGGCUGCUG---- .........((((((.......))))))((((((((((((((.(((((.((....))))))).)))))))((((((....))))))......)))))))..---- ( -50.60) >DroPse_CAF1 101630 104 + 1 UGCGUCCACUGUGCAGCUUAAGAGGAGUGCGAUCGGCACUGAAGGCCUUGGGACGUGCGGACAUCGGAGUGCGCAUCUUGCUGCGAGACAUCCGAUUCGCAUUG- .((((((....((((.(((.....)))))))...(((.(....))))...))))))(((((..(((((((.((((......))))..)).))))))))))....- ( -37.00) >DroSim_CAF1 83793 101 + 1 GGCGCAUUUGCUUCUGUUUCAAAGGAGUGCGGUCGGCACUGAAGGCCUUCGCACGCGAGGCCAUUGGUGUGCGCAGCUUGCUGCGCGAAUUGCGGCUGCUG---- .........((((((.......))))))(((((((((((..(.(((((.((....))))))).)..))))((((((....))))))......)))))))..---- ( -48.40) >DroEre_CAF1 88572 97 + 1 AGCGUACUGGCUUCUU---UAGAGGAGUGCGAUCGGCACUGAAGGCCUUCGUGCGCGAUGCCAUUGGUGUGCGCAGCUUGCUGCGCGAGUUGCGGCCGGA----- ..((((((..((((..---..)))))))))).(((((((..(.(((..(((....))).))).)..))...((((((((((...))))))))))))))).----- ( -43.80) >DroYak_CAF1 88361 100 + 1 AGCGCAUUUGUUUCUGCACCAGAGGAGUGCGAUCGGCACUGAAGGCCUUCGUACGCGAGGCCAUUGGUGUGCGCAACUUGCUGCGCGAAUUGCGGCUGGA----- .((((..........(((((((...(((((.....)))))...(((((.((....))))))).)))))))))))..((.((((((.....)))))).)).----- ( -41.40) >DroAna_CAF1 81857 105 + 1 UGCGCAUCUGCUUCUGGGCCAGGGGUGUGCGAUCGGCGCUGAAGGCCUUUGUGCGCGAGGCCAUCGGGGUUCGCAUCUUGCUCCUCGACAGGCGGUUGGUAGAGG (((.((.((((..(((..(.((((((((((((...((.((((.((((((.......)))))).)))).))))))))...)))))).).))))))).))))).... ( -42.60) >consensus AGCGCAUUUGCUUCUGCUUCAGAGGAGUGCGAUCGGCACUGAAGGCCUUCGUACGCGAGGCCAUCGGUGUGCGCAGCUUGCUGCGCGAAUUGCGGCUGGU_____ ..(((((...(((((.....))))).)))))(((((((((((.(((((.((....))))))).)))))))(((((......)))))......))))......... (-27.99 = -29.47 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:29 2006