Locus 3228

Sequence ID 2L_DroMel_CAF1
Location 9,247,996 – 9,248,089
Length 93
Max. P 0.770075
window5128

overview

Window 8

Location 9,247,996 – 9,248,089
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.03
Mean single sequence MFE -18.98
Consensus MFE -9.62
Energy contribution -12.27
Covariance contribution 2.64
Combinations/Pair 1.14
Mean z-score -2.00
Structure conservation index 0.51
SVM decision value 0.53
SVM RNA-class probability 0.770075
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9247996 93 - 22407834
UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU-------C
.......((((((((.-..(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -21.60)
>DroPse_CAF1 95255 99 - 1
UAAAUAUUUCAUGUCAAAGAGUUAGAUAGCGUUUAGAGUU---UUAAGAGAUAUUUCUGUUUUUCUCCAUGAUGUUUAUACCGUUUGUAAAUAUUCUGUAUU
..(((((((.....((((..((.....((((((..(((..---..((.(((....))).))...)))...))))))...))..)))).)))))))....... ( -12.40)
>DroSec_CAF1 77831 93 - 1
UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUAAUGCCAUUUGUAAAUAU-------C
.......((((((((.-..(((..((((((((((((.(((.((((..(..-....)..)))))))..)))))))))))))))...)))))))).-------. ( -25.00)
>DroSim_CAF1 79683 93 - 1
UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU-------C
.......((((((((.-..(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -21.60)
>DroEre_CAF1 84776 94 - 1
UAAAUAUUAUUUGCAUUUAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCACUUGUAAAUAU-------U
.......((((((((....(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -20.90)
>DroPer_CAF1 95379 99 - 1
UAAAUAUUUCAUGUCAAAGAGUUAGAUAGCGUUUAGAGUU---UUAAGAGAUAUUUCUGUUUUUCUCCAUGAUGUUUAUACCGUUUGUAAAUAUUCUGUAUU
..(((((((.....((((..((.....((((((..(((..---..((.(((....))).))...)))...))))))...))..)))).)))))))....... ( -12.40)
>consensus
UAAAUAUUAUUUGCAU_UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU_AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU_______C
.......((((((((....(((.....(((((((((.(..(((((.((........)))))))...))))))))))...)))...))))))))......... ( -9.62 = -12.27 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006