Locus 322

Sequence ID 2L_DroMel_CAF1
Location 943,597 – 943,690
Length 93
Max. P 0.959155
window514

overview

Window 4

Location 943,597 – 943,690
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 87.46
Mean single sequence MFE -30.10
Consensus MFE -26.55
Energy contribution -26.47
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -2.29
Structure conservation index 0.88
SVM decision value 1.50
SVM RNA-class probability 0.959155
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 943597 93 - 22407834
AGUAGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCUCAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG----
.....((((.(((((((.(((.....)))..)))))))))))..(.(((((((((..((..........))..))))))))).).........---- ( -30.30)
>DroPse_CAF1 73701 94 - 1
AGAGGAAACUGCCAAACAAUUUGUGAAGUGCGUUUUGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCU---GCGCAAAGUUGAUUAUUUCCAACCA
...(((((..(.(((....((((((.(((((.....((.(((((........))))))).....)))))---.)))))).))).)..)))))..... ( -28.40)
>DroSim_CAF1 72382 93 - 1
AGCAGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG----
(((((..(((((((.((((.(((..(.(((((.....))))).)..))).)))).))))....))).))))).....................---- ( -31.10)
>DroEre_CAF1 78323 93 - 1
AGUGGGAGCUGCCAAGCAAUUUUUGAAGUGCGUUUGCGGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGCGCAAACUUGAUUAUUGCCG----
..((..(((..((((((....((..(.((((.......)))).)..))))))).)..)))..))((((....)))).................---- ( -31.10)
>DroYak_CAF1 74878 93 - 1
AGUGGGAGCUGGCAAACAAUUUUUGAAGUGCGUUUGCCGCACAUUCAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG----
...((((((.(((((((.(((.....)))..)))))))))....(((((((((((..((..........))..)))))))))))....)))).---- ( -31.30)
>DroPer_CAF1 73706 94 - 1
AGAGGAAACUGCCAAACAAUUUGUGAAGUGCGUUUUGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCU---GCGCAAAGUUGAUUAUUUCCAACCA
...(((((..(.(((....((((((.(((((.....((.(((((........))))))).....)))))---.)))))).))).)..)))))..... ( -28.40)
>consensus
AGUGGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGCGCAAACUUGAUUAUUUCCG____
...(((((..((((.((((.((((((.(((((.....))))).)))))).)))).)))).....((((....))))...........)))))..... (-26.55 = -26.47 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:00 2006