Locus 3219

Sequence ID 2L_DroMel_CAF1
Location 9,210,754 – 9,210,847
Length 93
Max. P 0.817129
window5114

overview

Window 4

Location 9,210,754 – 9,210,847
Length 93
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 87.04
Mean single sequence MFE -28.88
Consensus MFE -20.66
Energy contribution -21.23
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -2.06
Structure conservation index 0.72
SVM decision value 0.67
SVM RNA-class probability 0.817129
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9210754 93 - 22407834
UACGCAGGGCAUUUAAUUCUAAUUCGCGUGGGUUG-----AGUUCAGUUGAGUUCCCUGUCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG
.....((((.((((((((..(((((((....).))-----)))).)))))))).))))((((((((.((((((.......)))))))))))))).... ( -29.10)
>DroSec_CAF1 45780 93 - 1
UACGCAGGGUAUU--AUUCUAAUUCGCGUGGGUUGGG---AGUUCAGUUGAGUUCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG
...((((((.(((--...(((((((.((.....)).)---)))).))...))).))))))((((((.((((((.......))))))))))))...... ( -30.50)
>DroSim_CAF1 47603 93 - 1
UACGCAGGGUAUU--AUUCUAAUUCGCGUGCGUUGGG---AGUUCAGUUGUGUCCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG
...((((((.((.--...(((((((.((.....)).)---)))).))....)).))))))((((((.((((((.......))))))))))))...... ( -29.20)
>DroEre_CAF1 51645 91 - 1
UACGCAGGGUAUU--AUUGCGAGUCGCGUGGC-----UUAAGUUAAGUUGAGUUCUCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGCGGUCGACUUUA
...((((((....--...(((...)))..(((-----((((......)))))))))))))((((((.((((((.......))))))))))))...... ( -26.70)
>consensus
UACGCAGGGUAUU__AUUCUAAUUCGCGUGGGUUG_____AGUUCAGUUGAGUUCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG
...((((((.((...((((((((((....))))))).........)))...)).))))))((((((.((((((.......))))))))))))...... (-20.66 = -21.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006