Locus 3216

Sequence ID	2L_DroMel_CAF1
Location	9,195,294 – 9,195,387
Length	93
Max. P	0.991416

overview

Window 0

Location	9,195,294 – 9,195,387
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	92.92
Mean single sequence MFE	-23.84
Consensus MFE	-20.10
Energy contribution	-20.34
Covariance contribution	0.24
Combinations/Pair	1.04
Mean z-score	-2.18
Structure conservation index	0.84
SVM decision value	2.27
SVM RNA-class probability	0.991416
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9195294 93 + 22407834
UAUAAAGACCCUCACUGGGUUGUCUUUGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACUUGAGGCUUGAGGAAAAUUCCUAACACACAA
.........(((((...((((((((((((.......(((......))).))))..)))))))))))))....((((....))))......... ( -22.00)
>DroSec_CAF1 31085 89 + 1
UAUAAAGACCCUCACUGGGUUGUCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACACACAA
......(((((.....)))))((.(-((...(((((((((..((..(.(((......))).).---.))..).))))))))..))).)).... ( -24.10)
>DroSim_CAF1 32383 89 + 1
UAUAAAGACCCUCACUGGGUUGUCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACACACAA
......(((((.....)))))((.(-((...(((((((((..((..(.(((......))).).---.))..).))))))))..))).)).... ( -24.10)
>DroEre_CAF1 35273 87 + 1
UAUAAAGAGGCUCUCUGGGUCGCCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCCAGCA--CAA
......(((((..........))))-)(((.(((((((((..((..(.(((......))).).---.))..).))))))))...))).--... ( -25.30)
>DroYak_CAF1 33370 87 + 1
UAUAAAGACCCUCUCUGGGUUGCUU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACA--CAA
..(((((((((.....))))..)))-))...(((((((((..((..(.(((......))).).---.))..).)))))))).......--... ( -23.70)
>consensus
UAUAAAGACCCUCACUGGGUUGUCU_UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU___GGCUUGAGGAAAAUUCCUAACACACAA
......(((((.....)))))..........((((((((.((((.....))))((((((........))))))))))))))............ (-20.10 = -20.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:10 2006