Locus 3215

Sequence ID 2L_DroMel_CAF1
Location 9,193,525 – 9,193,616
Length 91
Max. P 0.564887
window5109

overview

Window 9

Location 9,193,525 – 9,193,616
Length 91
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 73.39
Mean single sequence MFE -21.17
Consensus MFE -11.83
Energy contribution -12.42
Covariance contribution 0.58
Combinations/Pair 1.15
Mean z-score -1.44
Structure conservation index 0.56
SVM decision value 0.06
SVM RNA-class probability 0.564887
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9193525 91 + 22407834
AGGCCUAU----------------UUUUUUUUUUGUUUUUUGGUCUAUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUCUUC--UCAC
((((((((----------------........(((((..((((....))-))...)))))----...(((...((((((........))))))..)))))))))))..--.... ( -16.40)
>DroGri_CAF1 55168 94 + 1
CUGCCGUUGAAAUAG---------UUUCAG-UUUCAGUUUCA--GUUUC-AGUUUUUCAACUUGCCAUGAAAUAUGAAACAACUUUAUUUCAUUGUCAGUAGGUC-UA------
(((.((.((((((((---------.....(-(((((((((((--.....-((((....)))).....)))))).))))))....)))))))).)).)))......-..------ ( -20.40)
>DroSec_CAF1 29302 94 + 1
AGGCCUAUACAAUAUAUA----C--------UUUUUUUUUUGGUCUGUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCAC
((((((((..........----.--------.........((((((((.-...))))..)----)))(((...((((((........))))))..))))))))))-).--.... ( -20.50)
>DroSim_CAF1 30640 102 + 1
AGGCCUAUACAAUAUAUA----GGUUUUUUUUUUUUUUUUUUGUCUGUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCAC
(((((((((((((....(----((((.((((.((((....(((.((((.-...)))))))----....))))...)))).)))))......)))))..)))))))-).--.... ( -20.10)
>DroEre_CAF1 33538 105 + 1
AGGCCUAUAAGAUAUAGAUAUAUGUAUUUGUAA-UUUUUUUGGUCUGCC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCGU
((((((((....((((((((....)))))))).-......((((((((.-...))))..)----)))(((...((((((........))))))..))))))))))-).--.... ( -25.40)
>DroAna_CAF1 31127 96 + 1
AGGCCUAUGAAAUAG-------------UUUUUAGCUUUUUCGACUGCCGAGUGCAGCAG----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UCUCUCAC
.(((...(((((.((-------------(.....))).)))))...)))(((.(.((.(.----((((((...((((((........))))))..))).))).))-)).))).. ( -24.20)
>consensus
AGGCCUAUAAAAUAU_________UUUUUUUUUUUUUUUUUGGUCUGUC_AGUGCAGCAA____CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC_UC__UCAC
.(((((((....................................((((.....))))..........(((...((((((........))))))..))))))))))......... (-11.83 = -12.42 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:09 2006