Locus 3214

Sequence ID 2L_DroMel_CAF1
Location 9,191,730 – 9,191,836
Length 106
Max. P 0.777205
window5108

overview

Window 8

Location 9,191,730 – 9,191,836
Length 106
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 84.17
Mean single sequence MFE -30.55
Consensus MFE -27.24
Energy contribution -27.52
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.89
SVM decision value 0.55
SVM RNA-class probability 0.777205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9191730 106 - 22407834
UAUCCC---CCUCCAUCC-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCCGCAGCGUUAGAUGUGCCCUUCGUUGUUG-------
......---.........-.(((.....(((((........)))))......(((((((.(((((.((((........)))).))))).))))))).......)))....------- ( -26.90)
>DroGri_CAF1 51897 100 - 1
----------UGCUUUGCAGCACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUUGUUGUAG-------
----------.....(((((........))))).......((((((((((.((((.....)))).((((.((((((...((....))..)))))).))))))))))))))------- ( -36.30)
>DroSec_CAF1 27565 105 - 1
UAUCCCC----UCCAUCC-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCCGCAGCGUUAGAUGUGCCCUUCGUUGUUG-------
.......----.......-.(((.....(((((........)))))......(((((((.(((((.((((........)))).))))).))))))).......)))....------- ( -26.90)
>DroWil_CAF1 61732 99 - 1
----------AUAUUGAU-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUUGUUG-------
----------........-...........(((....((((..(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))))).)))..------- ( -30.60)
>DroMoj_CAF1 52079 104 - 1
-----CUUCUUUUUUUGU-ACACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUUGCUGUUG-------
-----.............-..................((((.(((((....((((.....)))).((((.((((((...((....))..)))))).))))))))).))))------- ( -30.60)
>DroAna_CAF1 29618 110 - 1
--UCCCC----CACUACU-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUGGUUCUUUUUGC
--....(----(((.((.-........................(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))).)))).......... ( -32.00)
>consensus
_____C_____UCCUUCC_AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUUGUUG_______
..............................(((....((((..(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))))).)))......... (-27.24 = -27.52 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:08 2006