| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,182,322 – 9,182,420 |
| Length | 98 |
| Max. P | 0.999041 |
| Location | 9,182,322 – 9,182,420 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 67.09 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.71 |
| SVM decision value | 3.34 |
| SVM RNA-class probability | 0.999041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9182322 98 - 22407834 --GAAAUAGAAAUACUACCAUUUGGUAGUAAUAAAUGCAAAAGCAUGACUCAUAAAUUGAUUUAUUUCACAAUUAUCUUGUCUUCGGCUA--------UGUCAAGCAU --((((((((..(((((((....)))))))....((((....))))..............))))))))..................(((.--------.....))).. ( -20.70) >DroSim_CAF1 19046 89 - 1 -AGAAAUAGAAAUACUACCAUUUGGUAGUAAUAAAUGCAAAAGCAUGACUCAUAAAUUUAUUUAUUUCACAAUUAUCUUGUCUUCGGCAA------------------ -.((((((((..(((((((....)))))))....((((....))))..............))))))))..........((.(....))).------------------ ( -20.00) >DroEre_CAF1 19173 90 - 1 UCGGAUUAGAAAUACUACCAAUUGGUAGUAAUAAAUGCAAAAGUAGCACUCAUAAAUAUAUUUAUUGCA---------UGCAAAUAGU-------G-UUGUUACACU- ............(((((((....)))))))....(((((((((((.............))))).)))))---------)......(((-------(-(....)))))- ( -18.42) >DroYak_CAF1 19931 108 - 1 UCGGAAUAGAAAUGCUAAUGUUUUCUGGUAAUAAAUGCAAAGGUAUGACGCAUAAAUACUUUUAUUCUAAAACUAUCUUGUAAUUGGCAACAAGACUAUGUUACACUU ......((((((.((....))))))))((((((.....((((((((.........))))))))............((((((........))))))...)))))).... ( -17.60) >consensus _CGAAAUAGAAAUACUACCAUUUGGUAGUAAUAAAUGCAAAAGCAUGACUCAUAAAUAUAUUUAUUUCACAAUUAUCUUGUAAUCGGCAA________UGUUACACU_ ..((((((((..(((((((....)))))))....((((....))))..............))))))))........................................ (-13.54 = -13.72 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:01 2006