| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,166,012 – 9,166,129 |
| Length | 117 |
| Max. P | 0.517617 |
| Location | 9,166,012 – 9,166,129 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -43.08 |
| Consensus MFE | -25.54 |
| Energy contribution | -24.63 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9166012 117 + 22407834 ACGGCGGGUU---GCAGCUUCUGUUGCUCCAGCAACUUGGCCAACUGGGCAUUCACAUCGAUAUCCAGACCUUUUUUCGGCGGAUCAUCGGCGCUGGGAUGGCUCUGUAGCCACUUUUGU ......((((---((((.....(((((....)))))..(((((.((((..(((......)))..))))......(..(((((.........)))))..))))))))))))))........ ( -39.20) >DroPse_CAF1 3159 119 + 1 -CGGCGGGUUGCUGCAGCUUCUGUUGGGCCAGCAGCUUGGCCAGCUGAGCGUUCACAUCAAUGUCCAGGCCCUUCUUGGGCGGCUCGUCGGUGCUGGGAUGGCUGUGAAGCCAUUUUUGC -(((((((((((((((((....))))...)))))))).((((..(((..((((......))))..)))((((.....)))))))))))))..((..((((((((....))))))))..)) ( -53.20) >DroGri_CAF1 9580 114 + 1 GCGACGGGUU---GCAGCUUU---UGUUCCAGCAACUUGGCAAGCUGGGCAUUCACAUCGAUGUCCAGACCCUUUUUGGGCGGCUCAUCUGCACUGGGAUGGCUCUGCAACCACUUUUGC ((((..((((---((((...(---..((((((((...((((...(((((((((......))))))))).(((.....)))..)).))..)))..)))))..)..))))))))....)))) ( -44.50) >DroWil_CAF1 10982 117 + 1 ACAGUUGGUU---GUAACUUUUGUUGCUCCAGCAAUUUGGCUAAUUGGGCAUUUACAUCGAUGUCCAGACCCUUUUUUGGUGGCUCAUCAGCAGAUGGAUGACUUUGUAGCCAUUUUUGU ...(((((..---(((((....))))).)))))....((((((.(((((((((......)))))))))..........(((.(..((((....))))..).)))...))))))....... ( -37.30) >DroMoj_CAF1 8326 117 + 1 ACGGCGGGUU---GGAGCUUUUGCUGUUCGAGCAAUUUGGCCAGCUGUGCGUUCACAUCGAUGUCCAGACCCUUCUUGGGCGGCUCAUCGGCGCUGGGAUGGCUCUGUAGCCACUUCUGC (((((.(((.---.((....(((((.....)))))))..))).)))))((((......(((((.((.(.(((.....))))))..))))))))).(((((((((....))))).)))).. ( -41.60) >DroAna_CAF1 4417 117 + 1 GCGGCAGGUU---GCAGCUUCUGUUGCUCCAGUAGCUUGGCUAGUUGGGCGUUUACGUCGAUGUCCAAGCCUUUCUUGGGCGGCUCAUCCGCGCUGGGAUUGCUUUUGAGCCACUUUUGC ..(((.((..---(((((....))))).))...(((..((((...((((((((......))))))))))))..(((..(((((.....)))).)..)))..))).....)))........ ( -42.70) >consensus ACGGCGGGUU___GCAGCUUCUGUUGCUCCAGCAACUUGGCCAGCUGGGCAUUCACAUCGAUGUCCAGACCCUUCUUGGGCGGCUCAUCGGCGCUGGGAUGGCUCUGUAGCCACUUUUGC ..((.((((.......(((...(((((....)))))..)))...(((((((((......))))))))))))).))...(((((.(((((........))))))).....)))........ (-25.54 = -24.63 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:58 2006