Locus 3204

Sequence ID 2L_DroMel_CAF1
Location 9,164,049 – 9,164,151
Length 102
Max. P 0.801139
window5093

overview

Window 3

Location 9,164,049 – 9,164,151
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -29.78
Consensus MFE -23.86
Energy contribution -23.58
Covariance contribution -0.28
Combinations/Pair 1.22
Mean z-score -1.67
Structure conservation index 0.80
SVM decision value 0.62
SVM RNA-class probability 0.801139
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9164049 102 - 22407834
GCAGCUUGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUUUCCGAAAGCGAGCUUA
..((((((......(((((((..(((((((((.((...(((((((....))).)))).((((....))))......)))))))))))))))))))))))).. ( -27.00)
>DroSec_CAF1 714 102 - 1
GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUA
..((((((......((((((((((..((....))..))))((((((((..(...((..((((....))))))...)..))))))))..)))))))))))).. ( -30.20)
>DroSim_CAF1 718 102 - 1
GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGUGGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUU
..((((((......(((((((....(((......)))..(((((((((..(...((..((((....))))))...)..)))))))))))))))))))))).. ( -29.00)
>DroEre_CAF1 661 101 - 1
GCAGCUCGUCCUCUCUUUCGGCUGAAGCUU-UGCGCCUGCGAGCUUUUAGGUGUUGCAUCUUUCAUAAGACGUUUCCGAAAAGCUCUCCCAACGCGAGCUUA
.((((.((..........))))))((((((-.(((...(.((((((((.((....((.((((....)))).))..)).)))))))).)....))))))))). ( -31.50)
>DroYak_CAF1 793 102 - 1
GCAGCCCGUCCUCUCUUUCGGCGGAAGCUUUUGCGCUGCCGAGCUUUGCAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCGCCGAAUGCGAGCUUA
(((((.(..........(((((((..((....)).)))))))((...)).).))))).((((....))))..........((((((((.....)))))))). ( -31.20)
>consensus
GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUA
..(((((((......((((((..((.(((((((((((((........)))))))....((((....))))........)))))))).))))))))))))).. (-23.86 = -23.58 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:54 2006