| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,152,444 – 9,152,537 |
| Length | 93 |
| Max. P | 0.776355 |
| Location | 9,152,444 – 9,152,537 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.57 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -10.79 |
| Energy contribution | -11.51 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9152444 93 + 22407834 AAAUAU--AUAUUU----UUUACCACUGUCUGCCUGAAUUGGCGGCAACAAACAGUGAAGCCCG---CAUAAAUAAUCAA----------------AGUUGUU--GGGGGAAAUGAAAUU ......--.....(----((((.(((((((((((......)))))......))))))...(((.---((...(((((...----------------.))))))--).)))...))))).. ( -20.90) >DroSec_CAF1 39661 96 + 1 AAAUAU--AUAUUU---UUUCACCACUGUCUGCCUGAAUUGGCGGCAACAAACAGUGAAGCCCG---CAUAAAUAAUCAA----------------AGUUGUUGUGGGGGAAAUGAAAUU ......--......---(((((.(((((((((((......)))))......))))))...(((.---(((((.((((...----------------.))))))))).)))...))))).. ( -26.80) >DroSim_CAF1 40003 98 + 1 AAAUAUAUAUAUUU---UUUCACCACUGUCUGCCUGAAUUGGCGGCAACAAACAGUGAAGCCCG---CAUAAAUAAUCAA----------------AGUUGUUGUGGGGGAAAUGAAAUU ..............---(((((.(((((((((((......)))))......))))))...(((.---(((((.((((...----------------.))))))))).)))...))))).. ( -26.80) >DroEre_CAF1 40060 93 + 1 AAAUAU--AUAUGUUUU----GCCACUUUCUGUCUGAAUUGG---CAACAAACAGUGAGGCCCGCAGCAUAAAUAAUCAA----------------AGUUGUU--GGGGGCAACGGAAUU ......--...((((((----((((..(((.....))).)))---))..)))))((...((((.(((((...........----------------...))))--).)))).))...... ( -26.84) >DroYak_CAF1 41202 100 + 1 AAAUAU--AUACAUUUUUUUCACCACUGUCUGCUUGAAUUGGCGGCAACAAACAGUGAAACCCGCAGCAUAAAUAAUCAA----------------AAUUGUU--GGGGGAAAUGGAAUU ......--...(((((.......(((((((((((......)))))......))))))...(((.(((((...........----------------...))))--).))))))))..... ( -25.24) >DroAna_CAF1 55520 110 + 1 AAAUUC--A--UUU----UUUGCCACUGUCUGCCAACUUUGGCGGCAACAAACAGUAAAACCCGCAGCAUAAAUAAUCAACUCCGAGCUACGGAGAAGCUUUU--CGGAGGAGAGGAAUU .(((((--.--(((----((..(((((((((((((....))))))......)))))........................(((((.....)))))........--.))..)))))))))) ( -26.70) >consensus AAAUAU__AUAUUU____UUCACCACUGUCUGCCUGAAUUGGCGGCAACAAACAGUGAAGCCCG___CAUAAAUAAUCAA________________AGUUGUU__GGGGGAAAUGAAAUU .......................(((((((((((......)))))......))))))...(((...........................................)))........... (-10.79 = -11.51 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:53 2006