Locus 3202

Sequence ID 2L_DroMel_CAF1
Location 9,135,853 – 9,135,943
Length 90
Max. P 0.860558
window5091

overview

Window 1

Location 9,135,853 – 9,135,943
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -20.34
Consensus MFE -11.42
Energy contribution -12.45
Covariance contribution 1.03
Combinations/Pair 1.11
Mean z-score -2.34
Structure conservation index 0.56
SVM decision value 0.83
SVM RNA-class probability 0.860558
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9135853 90 - 22407834
CAUAUAUAAUGCCAA-CC--CCCAUAAUGCUCAAC-----UUUGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCCCUUUUUUU
...............-..--......((((.....-----...))))(((((((((((((.((....))-)))))))-))))))................ ( -20.60)
>DroSec_CAF1 23346 87 - 1
CAUAUAUAAUGGCAA-CC--CCCAUAAUGCUCAAC-----AUAGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUGU
.....((((.(((((-..--......(((((....-----..)))))(((((((((((((.((....))-)))))))-))))))..))))).---.)))) ( -24.30)
>DroSim_CAF1 23615 87 - 1
CAUAUAUAAUGCCAA-CC--CCCAUAAUGCUCAAC-----UUUGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUUU
...............-..--......((((.....-----...))))(((((((((((((.((....))-)))))))-))))))........---..... ( -20.60)
>DroEre_CAF1 23530 85 - 1
CUUAUACAAUGCCAA-CC--CCAA--AUGCUCAAC-----UUUGCAUGCAUCAUAAAGUUGAGCUUGCU-GAUUUUG-UGGUGCACUUGUCC---UUUUC
.....(((((((..(-((--.(((--(.(((((((-----((((.........))))))))))).....-...))))-.)))))).))))..---..... ( -20.40)
>DroWil_CAF1 55737 91 - 1
CA--UGUAUAUCUAACCCCCCACAUAAAGUGCAAUGUUUUUUUGCAUGCU----CAAGUUAUGCUUGGUGGAUUUUAUUGGUGCAGUUGCUC---UUGUG
..--(((((..........((((.....((((((.......))))))...----((((.....)))))))).........))))).......---..... ( -17.71)
>DroYak_CAF1 24231 87 - 1
CAUAUAUAAUGCCAA-CC--CCCAUAGAGCGCAAC-----UUUGCAUGCAUCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUUA
...............-..--.....((..((((..-----..))).((((((((((((((.((....))-)))))))-)))))))...)..)---).... ( -18.40)
>consensus
CAUAUAUAAUGCCAA_CC__CCCAUAAUGCUCAAC_____UUUGCAUGCACCAUAAAGUUGAGCUUACU_GAUUUUG_UGGUGCACUUGUCC___UUUUU
...........................................(((((((((((((((((.((....)).))))))).)))))))..))).......... (-11.42 = -12.45 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:52 2006