| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,127,008 – 9,127,116 |
| Length | 108 |
| Max. P | 0.862129 |
| Location | 9,127,008 – 9,127,116 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.44 |
| Mean single sequence MFE | -24.45 |
| Consensus MFE | -8.77 |
| Energy contribution | -9.77 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9127008 108 + 22407834 AAACAGAACGGAAAAUGCUCAUGCACACAACAUCAAU------------UUCCACAACGUCGACGGCCACCAUGACCAACUCAUCGUCCUCCGCCACGCCCACACCCGGGUCGACUUCCU .........((((..(((....)))............------------.........(((((((((.((.((((.....)))).)).....)))....((......)))))))))))). ( -22.60) >DroPse_CAF1 18385 101 + 1 --CCACAAC--AAGAUGCUGAUGCACCACACAAC---------------AUCCACAACGUCGACGGCGACGAUGACCAACUCGUCGUCAUCGGCCACGCCCACACCAGGGUCGACCUCCU --.......--..((((.((.((.....)))).)---------------)))......(((((.((((((((........)))))))).)))))..(((((......))).))....... ( -29.20) >DroWil_CAF1 43881 103 + 1 -----AUUGUUAUAAUGCUAAUGCACACCACAUCCAC------------AUCGUCGACAUCAACGGCCACCAUGACCAACUCAUCAUCGUCGGCCACGCCCACUCCAGGCUCAACAUCAU -----..((((....(((....)))............------------......((.......((((((.((((........)))).)).))))..(((.......))))))))).... ( -18.30) >DroMoj_CAF1 22967 96 + 1 ----ACAAC--GGCAUGCUGAUGCACACCACAUC------------------CACCACAUCGACAGCCACGAUGACCAACUCAUCCUCCUCAGCCACGCCCACACCGGGCUCGACAUCGU ----.....--(((.((.(((((...........------------------.....))))).)))))((((((...........((....))....((((.....))))....)))))) ( -20.79) >DroAna_CAF1 30737 120 + 1 UUAAAGAACGGAAAAUGCUCAUGCACACCACAUCCACAUCGAUAUCCGCAUCCACAACGUCGACGGCGACCAUGACCAACUCGUCAUCCUCGGCCACGCCCACCCCGGGCUCGACCUCCU ........((((...(((....)))......(((......))).))))..........(((((.(((((..(((((......)))))..)).)))..((((.....)))))))))..... ( -30.60) >DroPer_CAF1 18592 101 + 1 --CCACAAC--AAGAUGCUGAUGCACCACACAAC---------------AUCCACAACGUCCACGGCGACGAUGACCAACUCGUCGUCAUCGGCCACGCCCACACCAGGGUCGACCUCCU --.......--.....((((((............---------------.........((.....))((((((((.....))))))))))))))..(((((......))).))....... ( -25.20) >consensus ___CACAAC__AAAAUGCUGAUGCACACCACAUC_______________AUCCACAACGUCGACGGCCACCAUGACCAACUCAUCGUCCUCGGCCACGCCCACACCAGGCUCGACCUCCU ...............(((....))).................................(((((.(((....((((........)))).....)))....((......)).)))))..... ( -8.77 = -9.77 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:46 2006