Locus 3197

Sequence ID 2L_DroMel_CAF1
Location 9,123,653 – 9,123,748
Length 95
Max. P 0.788290
window5083

overview

Window 3

Location 9,123,653 – 9,123,748
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.73
Mean single sequence MFE -16.47
Consensus MFE -11.32
Energy contribution -11.30
Covariance contribution -0.02
Combinations/Pair 1.23
Mean z-score -2.05
Structure conservation index 0.69
SVM decision value 0.58
SVM RNA-class probability 0.788290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9123653 95 + 22407834
UUUUUUACAAUACCCCUCCAUAU----ACCCCUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA
.......................----.((((((....(((((((.......)))))))))))))..(((......))).....((((......)))). ( -17.60)
>DroSec_CAF1 11098 95 + 1
UUUUUUACAAUACCCCUCCAUAU----ACCCGUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA
.......................----...........(((((((.......))))))).(((((((........)))))))..((((......)))). ( -16.90)
>DroSim_CAF1 11190 95 + 1
UUUUUUACAAUACCCCUCCAUAU----ACCCAUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA
.......................----...........(((((((.......))))))).(((((((........)))))))..((((......)))). ( -16.90)
>DroEre_CAF1 11178 99 + 1
UUUUGUACAGUACCCCUGCAUAUAUGUACUCCUCUUAGUAUAAGACCUCUAUGAUUAGAUAGGGGCUGACACAAUGGUUCCUCAAUCAUAAUUCUGAUA
...(((.(((..((((((......((((((......)))))).....((((....))))))))))))))))..((((((....)))))).......... ( -19.90)
>DroYak_CAF1 11467 95 + 1
UUUUUUACAGCGCCCCUCCAUAU----ACCCCUGUUCUUAUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA
...........(((.........----.((((((((....(((((.......)))))))))))))..........)))......((((......)))). ( -15.95)
>DroAna_CAF1 27518 76 + 1
------------CCCC------U----ACUUUUAUACUUUUAAUCCAAUUUUGAUAAGAUAGGGGCUGACACAAUAGA-CCUCAAUCAAAAUUUUGAUA
------------((((------(----(.((((((.(...............))))))))))))).............-.....(((((....))))). ( -11.56)
>consensus
UUUUUUACAAUACCCCUCCAUAU____ACCCCUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA
..................................................((((((....(((((((........))))))).)))))).......... (-11.32 = -11.30 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:45 2006