Locus 3195

Sequence ID 2L_DroMel_CAF1
Location 9,114,784 – 9,114,885
Length 101
Max. P 0.988785
window5080

overview

Window 0

Location 9,114,784 – 9,114,885
Length 101
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 74.53
Mean single sequence MFE -19.52
Consensus MFE -2.48
Energy contribution -4.36
Covariance contribution 1.88
Combinations/Pair 1.23
Mean z-score -2.41
Structure conservation index 0.13
SVM decision value 2.14
SVM RNA-class probability 0.988785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9114784 101 + 22407834
AUCAACACUAGCACC-AAAAAGC--------AGCAGUGAUGGCAGCUGUAGGUUACAAAAAAGUUACUUGCAGUCAGUAAAAAUAGCAAAGCAUUGAA-AAAAA-AAA-CUUU
.((((((((.((...-.......--------.))))))...((.(((((((((.((......)).)))))))))..((.......))...)).)))).-.....-...-.... ( -19.20)
>DroSec_CAF1 2393 99 + 1
AUCAACACUAACAGC-AAAAAGC--------AGCAGAGAUGACAGCUGUAGGUUACAAAAAAGUUACUUGCA----GUAAAAAUAGCAAAGCGUUGAA-AAAAAAAAACGUUU
.(((((.((....((-.....))--------.((....((....(((((((((.((......)).)))))))----))....)).))..)).))))).-.............. ( -20.30)
>DroSim_CAF1 2403 100 + 1
AUCGACACUAACAGC-AAAAGGC--------AGCAGAGAUGACAGCUGUAGGUUACAAAAAAGUUACUUGCA----GUAAAAAUAGCAAAGCGUUGAACAAAAAAAAACCUUU
.(((((.((....((-.....))--------.((....((....(((((((((.((......)).)))))))----))....)).))..)).)))))................ ( -19.90)
>DroEre_CAF1 2431 105 + 1
AUCAACUCCAACAGC-AAAAAGCAGGAGGCCAGCAGAGCUGGCAGCUGUAGCUAGCAAAAAAGAUACUUACA----CCAAAAAUCGCUUAGCAUGGGA-UACAA-AAA-UAUU
......(((((((((-......(....)((((((...)))))).))))).((((((................----.........)).)))).)))).-.....-...-.... ( -23.01)
>DroYak_CAF1 2450 94 + 1
AUCAACACUUACAGCCAAAAAGCUGGAGGCCAGCAGUGAUGGCAG------------AAAAAGUUACUUACA----GUAAAAAAAGCUUAGCAUAGGA-UAAAA-AAC-UAUU
.......((((..((((.(..(((((...)))))..)..))))((------------......((((.....----))))......)).....)))).-.....-...-.... ( -15.20)
>consensus
AUCAACACUAACAGC_AAAAAGC________AGCAGAGAUGGCAGCUGUAGGUUACAAAAAAGUUACUUGCA____GUAAAAAUAGCAAAGCAUUGAA_AAAAA_AAA_CUUU
................................((.......((...(((((((.((......)).)))))))....)).......)).......................... ( -2.48 =  -4.36 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:42 2006