Locus 3194

Sequence ID 2L_DroMel_CAF1
Location 9,111,477 – 9,111,595
Length 118
Max. P 0.902602
window5079

overview

Window 9

Location 9,111,477 – 9,111,595
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 82.71
Mean single sequence MFE -30.26
Consensus MFE -19.79
Energy contribution -21.59
Covariance contribution 1.80
Combinations/Pair 1.30
Mean z-score -2.33
Structure conservation index 0.65
SVM decision value 1.03
SVM RNA-class probability 0.902602
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9111477 118 - 22407834
UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAGCACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUCGUUUGGGGAGUUUCGAGGACUUCAUUUAA
...(((((((.(((((..((((((.(((.(.(((....))).).))).))))))..(((((((((((....(.((.....)).).....)))))))))))))))).)))))))..... ( -30.30)
>DroSec_CAF1 13588 118 - 1
UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAAUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA
...(((((((.(((((..((((((.(((...(((....)))...))).))))))..((((((((((((...(.((.....)).)....))))))))))))))))).)))))))..... ( -33.30)
>DroSim_CAF1 13715 118 - 1
UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAAUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA
...(((((((.(((((..((((((.(((...(((....)))...))).))))))..((((((((((((...(.((.....)).)....))))))))))))))))).)))))))..... ( -33.30)
>DroEre_CAF1 13681 113 - 1
UAUUGGGGCCAUUGGACAAGGCACAAUUUCAAUUUGAAGUCAGUAU-----CUUAAAUUUAUAAAUCUUAAAGUCGGUUCGAGUAGCUGGUUUGAAAAGUUCUUAGGGCCUCAUUUAA
...(((((((...(((((((..((.(((((.....)))))..))..-----))).............(((((.((((((.....)))))))))))...))))....)))))))..... ( -26.90)
>DroYak_CAF1 18662 118 - 1
UAUUGAGGCUAUUGGAUAGAGCUCAAGUUGAAUUUAAAGUCAGUACAGGUCCUAAAAUUUACCAAACUUAAAGUCAGUUUGAGUAACUGGCUUGAAAAGUUCCUAGGACUUCAUUCAA
..((((((((.((((((..(((....)))..)))))))))).....((((((((..........(((((.(((((((((.....)))))))))...)))))..))))))))...)))) ( -27.50)
>consensus
UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAGUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA
...(((((((.(((((..((((((.(((................))).))))))..((((((((((((...(.(((...))).)....))))))))))))))))).)))))))..... (-19.79 = -21.59 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:41 2006