Locus 3192

Sequence ID	2L_DroMel_CAF1
Location	9,110,244 – 9,110,337
Length	93
Max. P	0.625233

overview

Window 3

Location	9,110,244 – 9,110,337
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	93.66
Mean single sequence MFE	-20.92
Consensus MFE	-16.32
Energy contribution	-16.24
Covariance contribution	-0.08
Combinations/Pair	1.17
Mean z-score	-1.65
Structure conservation index	0.78
SVM decision value	0.19
SVM RNA-class probability	0.625233
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9110244 93 - 22407834
AAAGGAGACGAAAAGGAGCCGGGGAAUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA
...(....).......(((((.((.((((((.(......).))))))..(((((((((..((....))...)))))))))...)).))))).. ( -22.20)
>DroSec_CAF1 12354 93 - 1
AAAGGAAACGAAAAGGGGCAGGGGAUUGGCAGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA
........((.((..(((((((..(((.((((....))((.((((....)))).)).........))..)))..)))))))..)).))..... ( -19.80)
>DroSim_CAF1 12482 93 - 1
AAAGGAAACGAAAAGGGGCAGGGGCUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA
........((.((..(((((((......((((....)(((.((((....)))).))).......))).......)))))))..)).))..... ( -19.82)
>DroEre_CAF1 12447 93 - 1
AAAGGAAGGGAAAUGGAACAGGGGAUUGGCGGGAAACUACGUGUCAUGUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGCUAA
...((..(.((....(((((((..(((.((((....)(((.((((....)))).))).......)))..)))..)))))))..)).)..)).. ( -21.90)
>DroYak_CAF1 17432 93 - 1
AAAGGAAAGGAAAAUGAGCAGGGGGUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA
.........(....((((((((..(((.((((....)(((.((((....)))).))).......)))..)))..))))))))....)...... ( -20.90)
>consensus
AAAGGAAACGAAAAGGAGCAGGGGAUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA
......(((..((..(((((((......((((....)(((.((((....)))).))).......))).......)))))))..))...))).. (-16.32 = -16.24 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:35 2006