Locus 3190

Sequence ID 2L_DroMel_CAF1
Location 9,109,070 – 9,109,179
Length 109
Max. P 0.803657
window5068

overview

Window 8

Location 9,109,070 – 9,109,179
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 97.25
Mean single sequence MFE -30.46
Consensus MFE -28.20
Energy contribution -28.24
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.34
Structure conservation index 0.93
SVM decision value 0.62
SVM RNA-class probability 0.803657
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9109070 109 - 22407834
GCAAAGGUGUUUAUAGCAAGUUGAGAUUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC
((((((((((((((((((.(..(((........)))..).)))))......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -27.90)
>DroSec_CAF1 11176 109 - 1
GCAAAGGUGUUUAUUGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUUUUCGCUUUUUUAAGCC
(((((((((((((.....(((.((((((....))))))...))).......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -29.30)
>DroSim_CAF1 11299 109 - 1
GCAAAGGUGUUUAUAGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUUUUCGCUUUUUUAAGCC
((((((((((((((((((....((((((....))))))..)))))......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -30.20)
>DroEre_CAF1 11322 109 - 1
GCAAAGGUGUUUAUCGCAGGUGGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC
((((((((((((((((((((..((((((....))))))))))).)).....)))))))(((..((((.....))))..))).))))))........((((....)))). ( -34.80)
>DroYak_CAF1 16245 109 - 1
GCAAAGGUGUUUAUCGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUGAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC
(((((((((((((((...(((.((((((....))))))...)))..)))...))))))(((..((((.....))))..))).))))))........((((....)))). ( -30.10)
>consensus
GCAAAGGUGUUUAUAGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC
(((((((((((((.....(((.((((((....))))))...))).......)))))))(((..((((.....))))..))).))))))........((((....)))). (-28.20 = -28.24 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:30 2006