Locus 319

Sequence ID 2L_DroMel_CAF1
Location 910,762 – 910,861
Length 99
Max. P 0.672470
window511

overview

Window 1

Location 910,762 – 910,861
Length 99
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 85.69
Mean single sequence MFE -29.37
Consensus MFE -20.80
Energy contribution -20.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.09
Structure conservation index 0.71
SVM decision value 0.30
SVM RNA-class probability 0.672470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 910762 99 + 22407834
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACAGC--U---GAA---------AGAGUCGGGGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..((((((((.......((((.....))))......))--)---)))---------))......(((.........))). ( -27.52)
>DroPse_CAF1 38605 105 + 1
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACGCG--A---GACACCCCAC--AAAG-GGAAGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..(((((((((....)))))))))..........(((.--.---....(((...--...)-))..)))............ ( -27.20)
>DroEre_CAF1 46855 98 + 1
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACAGC--U---GAA---------AGAGUCG-GGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..((((((((.......((((.....))))......))--)---)))---------)).....-(((.........))). ( -27.52)
>DroYak_CAF1 41248 108 + 1
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACAGC--U---GAAAGAGCUGAAAGAGUCGGGGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..(((((((((....)))))))))..........((((--(---.....)))))..........(((.........))). ( -31.40)
>DroAna_CAF1 39146 106 + 1
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGGCGGGGCCGGGGACAC-------ACCAGCGCAGCAAGACAAAAGCCA
((((((((...(((.(((..((((.....))))..(((((((((....)))))))))........)))...)))(....)..-------..)))).))))............. ( -35.40)
>DroPer_CAF1 38367 105 + 1
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACGCG--A---GACACCCCAC--AAAG-GGAAGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..(((((((((....)))))))))..........(((.--.---....(((...--...)-))..)))............ ( -27.20)
>consensus
GUUGGCUGAAAGGCAGCCAAGUGUUCAAUGCACAACUUUUAGCGCAAUUGUUAAAAGAAUUAAAAGACAGC__U___GAAAC_______AGAGUCGAAGCGAAACAAAAGCCA
.(((((((.....)))))))((((.....))))..(((((((((....)))))))))........................................................ (-20.80 = -20.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:57 2006