Locus 3187

Sequence ID 2L_DroMel_CAF1
Location 9,107,761 – 9,107,881
Length 120
Max. P 0.947576
window5064

overview

Window 4

Location 9,107,761 – 9,107,881
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.25
Mean single sequence MFE -48.84
Consensus MFE -44.04
Energy contribution -44.56
Covariance contribution 0.52
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.90
SVM decision value 1.37
SVM RNA-class probability 0.947576
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9107761 120 - 22407834
ACUCCACGUUGCACAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGCACCUCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA
.......((..(.((((((.((.((((((.((((((.....).))))))))))).))((((((((.((....)).))))))))......)))))).(((......))).....)..)).. ( -47.70)
>DroSec_CAF1 9922 120 - 1
ACUCCACGUUGCGCAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGAAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA
.(((((((((((.((((((.((.((((((.((((((.....).))))))))))).)).))))))))((((...))))........))))))...)))((....))(((((...))))).. ( -47.30)
>DroSim_CAF1 10005 120 - 1
ACUCCACGUUGCGCAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA
..(((((...((.((((((.((.((((((.((((((.....).))))))))))).)).))))))))((((...))))..))))).....((((((((((......))).)))...)))). ( -50.00)
>DroEre_CAF1 10073 120 - 1
ACUCGCCAUUGCACAGGUAACUCAAGUUCGUGCCCCUCGCAGCGGGCGGCACUCCAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA
....((((..((.((((((..........(((((.((((...)))).))))).....((((((((.((....)).))))))))......))))))..))..))))(((((...))))).. ( -54.00)
>DroYak_CAF1 14768 119 - 1
ACUCGACAUGGCACAGGUAACAGGAGUUUGUGCCCCUCACAGCGGGCGG-GCUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGGCAUCAAGUGGCAA
......((.(((.((((((.((((((((((.(((((((.....))).))-)).)))))).)))).(((((...)))))...........))))))..))).))((.((.....)).)).. ( -45.20)
>consensus
ACUCCACGUUGCACAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA
......((..((.((((((.((.((((((.((((((.....).))))))))))).))((((((((.((....)).))))))))......))))))..))..))..(((((...))))).. (-44.04 = -44.56 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:26 2006