Locus 3182

Sequence ID 2L_DroMel_CAF1
Location 9,105,085 – 9,105,190
Length 105
Max. P 0.997118
window5052

overview

Window 2

Location 9,105,085 – 9,105,190
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 94.38
Mean single sequence MFE -22.22
Consensus MFE -19.48
Energy contribution -19.72
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.88
SVM decision value 2.80
SVM RNA-class probability 0.997118
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9105085 105 + 22407834
CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAAGAAAGCCAAGGAAAGUGGCAAACAAAGGAGAACA
......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.......)))).......)))..)). ( -21.20)
>DroSec_CAF1 7272 105 + 1
CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA
......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.(....))))).......)))..)). ( -25.50)
>DroSim_CAF1 7354 105 + 1
CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA
......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.(....))))).......)))..)). ( -25.50)
>DroEre_CAF1 7453 105 + 1
CUCGAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUACACAAAAUCGGAAUGAUACCAAACAAAGCCAGCGAAAAUGGCAAACAAAGGAGGACA
......((..(((......(((((((.........((((.((.((((......)))))))))).)))))))....((((.......)))).......)))..)). ( -22.70)
>DroYak_CAF1 7772 105 + 1
CUUGAAAUAAUCCGUGGAAUUUGAUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGAACAAACAAAGCCAAAGAAAAUGGCAAACAAAGGAGGACA
..........(((((((((((((((.....))))).)))))((((((......)))))).......)).......((((.......)))).......)))..... ( -16.20)
>consensus
CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA
......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.......)))).......)))..)). (-19.48 = -19.72 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:15 2006