| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,101,014 – 9,101,127 |
| Length | 113 |
| Max. P | 0.982659 |
| Location | 9,101,014 – 9,101,127 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.82 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -13.44 |
| Energy contribution | -12.83 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.35 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9101014 113 + 22407834 --GUAAGGUAUGCCGCAUUAAAUUAAAUACUUAGCCGCUUCUCGGCACCGCUUGGCGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGCCGGAGACUUUUGUGGGUCCU-----U --..((((.((.(((((....((((((((((((((((.....))))...(((.((((((.....)))))))))...)))))))))))).......(....)...))))))))))-----) ( -37.60) >DroVir_CAF1 26525 94 + 1 -------GAGCGACGCAUUAAAUUAAAUACUUAGCCGCUG----GAA-------UAGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGUCUGAGACUUCAGC---UCCG-----G -------((((((((.((...(((((((((((((..((((----(.(-------((((....))))).)))))..))))))))))))))).))))((......))))---))..-----. ( -31.10) >DroGri_CAF1 32599 94 + 1 -------GGUGUACGCAUUAAAUUAAAUACUUAGCCGCUG----GAA-------UAGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGUCUGAGACUUCAGC---UCCG-----G -------((((....))))..(((((((((((((..((((----(.(-------((((....))))).)))))..)))))))))))))..(((.(((......))).---..))-----) ( -26.90) >DroEre_CAF1 3291 113 + 1 --GUAAGGUAUGCCGCAUUAAAUUAAACACUUAGCCGCUGCUCGGCACCGCUUGGCGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGCCGGAGACUUCUGUGGGUCCC-----U --...(((.((.(((((....((((((((((((((((.....))))...(((.((((((.....)))))))))...)))))))))))).......(....)...))))))).))-----) ( -38.90) >DroYak_CAF1 3447 115 + 1 AGGUAAGGUAUGCCGCAUUAAAUUAAAUACUUAGCCGCUUCUCGGCAGCGCUUGGCGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGCCGGAGACUUCUGUGGCUCCC-----U .....(((...((((((....((((((((((((((((.....))))...(((.((((((.....)))))))))...)))))))))))).......(....)...))))))..))-----) ( -40.80) >DroMoj_CAF1 32094 99 + 1 -------GAGCGACGCAUUAAAUUAAAUACUUAGCCGCUG----GAA-------UAGUAAAAAUUAUGCUAGCAUUUAAGUGUUUAAUAUCCGUCUGAGACUUUAGC---UGCGUACCCG -------.....((((((((((((((((((((((..((((----(.(-------((((....))))).)))))..)))))))))))))....(((...))).)))).---)))))..... ( -27.20) >consensus _______GUAUGACGCAUUAAAUUAAAUACUUAGCCGCUG____GAA_______GAGUAAAAAUUAUGCCAGCAUUUAAGUGUUUAAUAUCCGCCGGAGACUUCAGC___UCCG_____G .....................(((((((((((((..((((.............................))))..)))))))))))))......((((....)))).............. (-13.44 = -12.83 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:11 2006