Locus 3175

Sequence ID 2L_DroMel_CAF1
Location 9,098,259 – 9,098,360
Length 101
Max. P 0.832159
window5044

overview

Window 4

Location 9,098,259 – 9,098,360
Length 101
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -33.12
Consensus MFE -17.55
Energy contribution -19.80
Covariance contribution 2.25
Combinations/Pair 1.13
Mean z-score -2.78
Structure conservation index 0.53
SVM decision value 0.72
SVM RNA-class probability 0.832159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9098259 101 - 22407834
------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30)
>DroGri_CAF1 29098 93 - 1
------------GUUGAAUGCAGCGAAAGCUCAGCU----------AUGUGCAACGGCUAAAUUACU-CGAGCUGUUUGACUUAAUGGUC---GCUCAGAUUGGCAGCAAACAGACGUC
------------(((...((((((....)))..(((----------(((.(((((((((........-..))))))).((((....))))---)).))...)))).)))....)))... ( -27.10)
>DroSec_CAF1 487 101 - 1
------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30)
>DroSim_CAF1 488 101 - 1
------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30)
>DroEre_CAF1 428 101 - 1
------------GU------CUGUAAAAAUAGAUAUUUUGCAGAGUCUGGGUGGCUUUCCAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
------------((------((((.(((((....)))))((..((((((((((((...(((.(((..((((.....))))..))))))..)))))))))))).)).....))))))... ( -34.60)
>DroYak_CAF1 492 113 - 1
GGCAGGCUGUCUGU------CUGUAAAAAUAUAUAUGUUGCAGAGUAUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
....(((.((((((------.((((......))))((((((.((...((((((((.........)))....((((((.........)))))).)))))..)).)))))).))))))))) ( -31.10)
>consensus
____________GU______CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC
...................................((((((...(((((((((((.........)))....((((((.........)))))).))))))))..)))))).......... (-17.55 = -19.80 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:07 2006