Locus 3174

Sequence ID 2L_DroMel_CAF1
Location 9,096,268 – 9,096,366
Length 98
Max. P 0.605979
window5043

overview

Window 3

Location 9,096,268 – 9,096,366
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -32.00
Consensus MFE -25.64
Energy contribution -25.42
Covariance contribution -0.22
Combinations/Pair 1.27
Mean z-score -1.86
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.605979
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9096268 98 + 22407834
--UUACAUCGAAUUUCCAAAUUGUGGGUAGUGGACGGACUAAACCACUAUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGUUGUUCGAUGAUUUUGGGUA
--...((((((((.....(((..((((((((((..........)))))))...((((((...))))))...)))..)))...)))))))).......... ( -29.50)
>DroSec_CAF1 90327 98 + 1
--UUACAUCGAAUUUCCCAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGCUAUUCGAUGAUUUUGGGGA
--...((((((((....((((..(((..(((.((((((((..(((.....)))))))))..))..)))...)))..))))..)))))))).......... ( -29.80)
>DroSim_CAF1 95431 98 + 1
--UUACAUCGAAUUUCCAAAUUGUGGCUAGUGGACGGACUAAACCACUUUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA
--...((((((((.....(((..((((.(((.((((((((..(((.....)))))))))..))..)))..))))..)))...)))))))).......... ( -31.80)
>DroEre_CAF1 92469 98 + 1
--UUACAUCGAAUUGCCAAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCACCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA
--...((((((((.((..(((..(((..(((...(((....((((((....))))))....))).)))...)))..))))).)))))))).......... ( -32.40)
>DroYak_CAF1 92825 98 + 1
--UUACAUCGAAUUGCCAAAUUGUGGGUAGUGGAGGGACUAAACCACUUUAGUGGUUCGCACCGAGCUUUGCCGUGGUUGCAGUUCGAUGAUUUUGGGGA
--...(((((((((((..(((..(((..(((...((..(..((((((....)))))).)..))..)))...)))..)))))))))))))).......... ( -35.70)
>DroAna_CAF1 103542 100 + 1
UCUCGCUGCAAGCCAGUGAACUGUGGUUAGUGGACCGAACAAACCACUUUAGUGGUUGCCACUGAGCUUUGCUGUGGCGAUGGUUUGAUGAUUUUAAGGA
..((((..((.(((((....))).(.(((((((........((((((....)))))).))))))).)...))))..)))).................... ( -32.80)
>consensus
__UUACAUCGAAUUUCCAAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCACCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA
.....((((((((.....(((..(((..(((...(((....((((((....))))))....))).)))...)))..)))...)))))))).......... (-25.64 = -25.42 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006