Locus 3173

Sequence ID 2L_DroMel_CAF1
Location 9,081,077 – 9,081,178
Length 101
Max. P 0.996096
window5042

overview

Window 2

Location 9,081,077 – 9,081,178
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -29.10
Consensus MFE -23.98
Energy contribution -25.06
Covariance contribution 1.08
Combinations/Pair 1.21
Mean z-score -2.60
Structure conservation index 0.82
SVM decision value 2.65
SVM RNA-class probability 0.996096
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9081077 101 - 22407834
CUCACGUAUCGAGGUAGAAAGACUCAAACGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA
.....(.((((((((((...((((....((((((.((((((((....))))))))...))))))....))))..)))).)))))))............... ( -33.20)
>DroSec_CAF1 74965 99 - 1
CUCACGUAUCGAGGUAGA-AGACUCAAGCGGUUUGGGUUCAACAAUAGUUGAGC-AAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA
.....(.((((((((((.-.((((....((((((..(((((((....)))))))-...))))))....))))..)))).)))))))............... ( -30.60)
>DroSim_CAF1 80344 100 - 1
CUCACGUAUCGAGGUAGA-AGACUCAAGCGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA
.....(.((((((((((.-.((((....((((((.((((((((....))))))))...))))))....))))..)))).)))))))............... ( -33.50)
>DroEre_CAF1 77169 101 - 1
CUCACGUAUCGGGAAGGAAAGAUACAAUCGGUAUGGGUUGGACAAUAGUUGAGCCAAAGAGCCGGAAAAGUCGACUACUUUUGAUAUUUGACUUCAUCCGA
(((.((((((((...(........)..))))))))((((.(((....))).))))...))).((((.(((((((.(((....).)).)))))))..)))). ( -28.30)
>DroYak_CAF1 77162 101 - 1
CUCACGUAUUGGCAAAGAAAGACUCAAACGGUAUGGGUUGAACAAUAGUUGAGCCAAAGAGCCGGAAAAGUCGACUACUUUUGAUAUUUAACUUCAUCUGA
.....((((..(........((((....((((.(.((((.(((....))).))))...).))))....))))........)..)))).............. ( -19.89)
>consensus
CUCACGUAUCGAGGUAGAAAGACUCAAACGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA
.......((((((((((...((((....((((((.((((((((....))))))))...))))))....))))..)))).))))))................ (-23.98 = -25.06 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:05 2006