| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,079,730 – 9,079,822 |
| Length | 92 |
| Max. P | 0.856030 |
| Location | 9,079,730 – 9,079,822 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.21 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -14.59 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9079730 92 + 22407834 C-AUGAGACAAGAAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUA-AAAUGCUAAAAA--AAAAAAACAA-AAACAUCC .-...............(((((.((((....))))........((((((.......)))))).-...)))))....--..........-........ ( -12.00) >DroSec_CAF1 73585 93 + 1 C-AUGAGACAGGGAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUC-AAAUGCUAGAAAAA-AAAAAACAA-AAACAUCG .-..............((((((.((((....))))....(((.((((((.......)))))).-))))))))).....-.........-........ ( -15.20) >DroSim_CAF1 78965 94 + 1 C-AUGAGACAGGGAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUC-AAAUGCUAGAAAAAAAAAAAACAA-AAACAUCG .-..............((((((.((((....))))....(((.((((((.......)))))).-)))))))))...............-........ ( -15.20) >DroEre_CAF1 75816 83 + 1 -------ACAGGGAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUAGAAAUGCCAGAAAA---A---GCAA-CAACAGCG -------.........((((((.((((....))))...((((.((((((.......)))))).))))))))))....---.---((..-.....)). ( -19.70) >DroYak_CAF1 75913 91 + 1 U-AUGAGACAGGGAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUC-AAAUGCUAGAAAA---AAAAACAA-AAACAUCG .-..............((((((.((((....))))....(((.((((((.......)))))).-)))))))))....---........-........ ( -15.20) >DroAna_CAF1 79403 94 + 1 UAAGGGGACAAGGAAACUGGCAAUGCAUGCCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUC-AAAUGCUAGGAAAA-CACAAACAAAAAACAUG- ...(....).......((((((.((((....))))....(((.((((((.......)))))).-))))))))).....-.................- ( -17.10) >consensus C_AUGAGACAGGGAAACUGGCAAUGCAUGUCUGCAAUUUUUUAAGCAAACAUUUUAUUUGCUC_AAAUGCUAGAAAA__AAAAAACAA_AAACAUCG ................((((((.((((....))))........((((((.......)))))).....))))))........................ (-14.59 = -14.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:04 2006