Locus 3170

Sequence ID 2L_DroMel_CAF1
Location 9,076,304 – 9,076,399
Length 95
Max. P 0.703909
window5039

overview

Window 9

Location 9,076,304 – 9,076,399
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 87.04
Mean single sequence MFE -25.57
Consensus MFE -20.40
Energy contribution -22.35
Covariance contribution 1.95
Combinations/Pair 1.09
Mean z-score -2.29
Structure conservation index 0.80
SVM decision value 0.36
SVM RNA-class probability 0.703909
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9076304 95 - 22407834
ACCUUAGGCCCAGCCAGAGGCUUUUCAUGGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC
.......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00)
>DroSec_CAF1 70032 95 - 1
ACCUUAGGCAUAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC
.......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00)
>DroSim_CAF1 75453 95 - 1
ACCUUAGGCCCAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC
.......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00)
>DroEre_CAF1 72325 95 - 1
UCCCUAGGCCCAGCCACAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC
.......((...(((..(((((((((....)))))))))........(((((((.--...)))))))............)))...)).......... ( -25.10)
>DroYak_CAF1 72402 95 - 1
GCCUUAGGCCUAGCCAGAGGCAUUCCACAGGAGGGGCCAUGAACAAGCAUUGACC--AAAGUCAAUGGCAAAACUUUUUGGUGCAGCAAUAAAAAUC
(((((.(((...))).)))))......(((((((.((((((......))(((((.--...)))))))))....)))))))................. ( -26.00)
>DroAna_CAF1 75587 88 - 1
ACUUUGGGCGUAUCCCGGGG---------GAAUGGGAGUCGAACAAACAUUGACCGAAAAGUCAAUGACAAAACUUUUUGGCGCAGCAAUAAAAAUC
...(((.((((.(((((...---------...)))))..........(((((((......))))))).............))))..)))........ ( -21.30)
>consensus
ACCUUAGGCCCAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC__AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC
.......((...(((.((((((((((....)))))))))).......(((((((......)))))))............)))...)).......... (-20.40 = -22.35 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006